BAC Information

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BAC

Clone NameMSMg01-045O15
Chromosome10 (Build37)
Map Location 101,617,384 - 101,617,798
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045O15.T7 (MSMg01no045_o15.b1)MSMg01-045O15.TJ (MSMg01no045_o15.g1)
ACCAG276423AG276424
length740711
length of high quality
(start - end)
81 (51 - 131)417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no045_o15.b1 PHD_FILE: MSMg01no045_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:59 2005CHROMAT_FILE: MSMg01no045_o15.g1 PHD_FILE: MSMg01no045_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTAGTACCGTACCATCCGCGGAATTCACTTACTTACATCTAATTGTT
GATGTGATAAATTTAAATATACCTTTCCATCATTATTCCTACGTGTTCCC
ATAAGAAGTTCTGAAGTGTGTGTGTATATGAGGGTGCTGGTTGTGGTCGG
TGCTGCTGCTACTANTATTCTCTTTCCCCCCCTCCCCCCCCCCCTCCTCC
TCTTTTTCTCCCCCCCCTTCCCCCCCTCTCTCTTCCCTCTCCACTCTTCT
TCCCTCTTTTTTTTTTTCCCCTTTCCCTCCCCCCTTTCTCCCTCTTCCCC
CCCCTTTTTTTTTCCTCTCCCCTTCTTTTTTCTCCTTTCTTCCTCACCAT
TTCTTTTCCCCTCCCCTTCACATCCTTTCCATATCTCTACTATTCTCTCT
TTCTTTCTCCCCCCTCCCTTTTCCCTTTCCCTTCCTCCCTCTCTCTTCCC
CACTTACTCTTTCTCTTCCTCTCTCTTCTCCTCTCTTCCTTCTTTTCTTC
ATCCTCTTTCTCATCTTTCCTTCCTCTCTCCATCTCCCTTCTTCTTACTC
TCCCTCTCTACCCCCTCTTCTTCCATTTCTCTTTTTTCTCTCTCACTCTT
TTCCCTACCTTTCTTCCTACCCTTCCCCTCTTCCCTTTCTCTCTCTTATC
CTTTTCTACTTCTCACCTTTTCACCCACCTCCCCCTTTTTTTTCCCCTCT
CTCTACCTCCTCCTCTCCTCTTTCTCTTCTTCCCCCTCCC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAACGAGCTTGAAATCACTTTAACCAGT
CTCACATTGAACAGTGAAGAATATTAAATTGCAGCATTCTGCATCATGCT
GAAGCAAAAGACTGGTCCATTATCTAGTTATCCACAAGATGGCAGCTCTG
GTCATTTGGCCACTAATGCCTTTATTGCGATCCTGTTTTTGTTAATAATA
AAATAGAAAGTATGTGAATAGCATAGGTATAAATGTTCCTAAGATTTCTC
AACTTCAGAATAGTAAAACAAATTATTTATATCACCTTAAAATATGCGAT
TTCGAAACACTGAAAACTATCCGATTTAATTTACAATTTTTTATTATAAG
TAATTTTGGAATCCACACTCCTTAAAAGTTATTGCTTTTCTTCAATTTTG
TTTCAAAACAAGGAATTGCTTTAAAATGCAAAGCTAGTATTAACACAAAT
GAAGAAACCCCGACTGCAGCAGTTTTACCTCCCCGAGACAGAGACCTAAA
AACCCCCTTTTCCAGCTAGTAAGTTCTAGATATGGTTTATCTTCCATACG
AGCATGTATTTTACTTGAGAGCCCCTGAAATTCCATTATAATGCTTAATA
ACTTCCCCCAGCCCCCTATTTTTTCTTCACATTCACCCCCAAATCCCCCC
TGGCTTTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_o15.g1 MSMg01no045_o15.g1 CHROMAT_FILE:
MSMg01no045_o15.g1 PHD_FILE: MSMg01no045_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:59 2005
         (417 letters)



>mm_chr10_101617184_101618000
          Length = 817

 Score =  741 bits (383), Expect = 0.0
 Identities = 407/415 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttgaaatcactttaaccagtctcacattgaacagtgaagaatattaaattgcagcatt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 615 gcttgaaatcactttaaccagtctcacgttgaacagtgaagaatattaaattgcagcatt 556

                                                                       
Query: 61  ctgcatcatgctgaagcaaaagactggtccattatctagttatccacaagatggcagctc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 555 ctgcatcatgctgaagcaaaagactggtccattacctagttatccacaagatggcagctc 496

                                                                       
Query: 121 tggtcatttggccactaatgcctttattgcgatcctgtttttgttaataataaaatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tggtcatttggccactaatgcctttattgcgatcctgtttttgttaataataaaatagaa 436

                                                                       
Query: 181 agtatgtgaatagcataggtataaatgttcctaagatttctcaacttcagaatagtaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtatgtgaatagcataggtataaatgttcctaagatttctcaacttcagaatagtaaaa 376

                                                                       
Query: 241 caaattatttatatcaccttaaaatatgcgatttcgaaacactgaaaactatccgattta 300
           ||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 375 caagttatttatatcaccttaaaatatgcgatttcgaaataccgaaaactatctgattta 316

                                                                       
Query: 301 atttacaattttttattataagtaattttggaatccacactccttaaaagttattgcttt 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 atttacaattttttattataagtaattttggaatccactctccttaaaagttattgcttt 256

                                                                  
Query: 361 tcttcaattttgtttcaaaacaaggaattgctttaaaatgcaaagctagtattaa 415
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 tcttcaattttgtttcaaaacaaggaattgctttaaaatgcaaagttagtattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)