BAC Information

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BAC

Clone NameMSMg01-046B07
Chromosome10 (Build37)
Map Location 62,330,146 - 62,496,995
singlet/doubletdoublet
Overlap geneCxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
Downstream genePbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046B07.T7 (MSMg01no046_b07.b1)MSMg01-046B07.TJ (MSMg01no046_b07.g1)
ACCAG276546AG276547
length635683
length of high quality
(start - end)		299 (62 - 360)456 (74 - 529)
definitionCHROMAT_FILE: MSMg01no046_b07.b1 PHD_FILE: MSMg01no046_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:11 2005CHROMAT_FILE: MSMg01no046_b07.g1 PHD_FILE: MSMg01no046_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,496,697 - 62,496,995)(62,330,146 - 62,330,601)
sequence
CTAAATTTGCGGCGCTAAACGACTCCTATATCAGAGGATCCGCGGAATTC
ATAACACACACCACTCTAGTACTTTCACAGTGTAAAAGTTCATTAACAGG
GTGCTGGCAAGCCACTATGAACATGGATATTGGGGACATGTCTTGTTTTC
ATTTGGTTTAAAGAAAATAAAAATTAACCAGTGTCTTGATGTTTTCTGCG
TTACAACAGCACGAGCCAGCAGCTTGTTTGCGATGGCAACACCCCCACCT
CCCCACTCCTCATCAAAAACTGGTTGGGTCCTTTCTTCTATACTAACTAT
ACTTGATGAAATTGCACCAGATATTTATATTTTGAACTTTGAGGGTTTAT
ATAGAATATAATCTTCACAAGTTAAGAGATGCACCCGAACCTTTTTTAAA
AAAACCCCTGGAAAAAACCCTGGGCCCCTTTTGGAAAATTAAAACCCCCC
GTAAATCCCCCTAAAACCCCCCTAAAAGGGCCAAAAATTCTTGTTGGTGA
TCACCCGTGGCCTCTTTATGGTTCCCTTTGTTCTCTCGCTGGGGTTGCCT
ACTCCCCCCCCTTTTTTTAAATACCCCCTTCTTTTTTTTTGGGGTGGGGT
CTCCTAAACTACTTTGCGCTTTATTATCCCCTTTG

CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTTTTTGTTAATATTTGTTAAATAT
TTTGTTAAATATCCATACCAAAGCCAAGGGAATCTGACCTAACCATGACA
GCAGTGCAATACAGCAAACACTGAGAACTGCTGTGGACTCAGCGTGTGGC
ACACACCTTAACCCCAGCACTCAGGAGACAGAGGCAGACAGATCCACGAG
AGTTCGAGGCCAGCCTGGTCTACACAGGGAGTTCCAGGACAGGGAGAGCT
ACATAGTGAGACCCTGTCTGAGAGGTTGGGAGGGGTTGGCTCTGTGGGGA
ACCAAAGCGACCAAGAAATAGCTGAAAACGCATGGCCATGTCAGTCTGGG
TCGCGTCTGCTCAGGGTGGAGAACAGGTGCACGGGTGGACCACACTTAGC
CATCATCCAGCTGATGTCAACTTTGAAGAACATCCCCATTCCTTTTTCTA
TCATCATCATCATTTTGCCTGGCTGTGTTTGTGTTGGTACACTCTGCACA
GCATATGGAGCTCAAGGAGAATTAGCTTGGGGAGCTAACTGTCTCCCACT
ATTAGAGTCCCAGGTATCATATCTAGGTCAGGATGAAGTCTTTTCTAACC
CTTCTGTGTCACCTCAAGGATCTGCCAGAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_b07.b1 MSMg01no046_b07.b1 CHROMAT_FILE:
MSMg01no046_b07.b1 PHD_FILE: MSMg01no046_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:11 2005
         (299 letters)



>mm_chr10_62496497_62497195
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctagtactttcacagtgtaaaagttcattaacagggtgctggcaagccactatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cactctagtactttcacagtgtaaaagttcattaacagggtgctggcaagccactatgaa 440

                                                                       
Query: 61  catggatattggggacatgtcttgttttcatttggtttaaagaaaataaaaattaaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catggatattggggacatgtcttgttttcatttggtttaaagaaaataaaaattaaccag 380

                                                                       
Query: 121 tgtcttgatgttttctgcgttacaacagcacgagccagcagcttgtttgcgatggcaaca 180
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| 
Sbjct: 379 tgtcttgatgttttctgcgttacaatagcactagccagcagcttgtttgcgatggcaacg 320

                                                                       
Query: 181 cccccacctccccactcctcatcaaaaactggttgggtcctttcttctatactaactata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccccacctccccactcctcatcaaaaactggttgggtcctttcttctatactaactata 260

                                                                      
Query: 241 cttgatgaaattgcaccagatatttatattttgaactttgagggtttatatagaatata 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgatgaaattgcaccagatatttatattttgaactttgagggtttatatagaatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_b07.g1 MSMg01no046_b07.g1 CHROMAT_FILE:
MSMg01no046_b07.g1 PHD_FILE: MSMg01no046_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:11 2005
         (456 letters)



>mm_chr10_62329946_62330801
          Length = 856

 Score =  835 bits (432), Expect = 0.0
 Identities = 450/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttttgttaatatttgttaaatattttgttaaatatccataccaaagccaagggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttttgttaatatttgttaaatattttgttaaatatccataccaaagccaagggaat 260

                                                                       
Query: 61  ctgacctaaccatgacagcagtgcaatacagcaaacactgagaactgctgtggactcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacctaaccatgacagcagtgcaatacagcaaacactgagaactgctgtggactcagc 320

                                                                       
Query: 121 gtgtggcacacaccttaaccccagcactcaggagacagaggcagacagatccacgagagt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtgtggcacacagcttaaccccagcactcaggagacagaggcagacagatccaagagagt 380

                                                                       
Query: 181 tcgaggccagcctggtctacacagggagttccaggacagggagagctacatagtgagacc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgaggccagcctggtctacacatggagttccaggacagggagagctacatagtgagacc 440

                                                                       
Query: 241 ctgtctgagaggttgggaggggttggctctgtggggaaccaaagcgaccaagaaatagct 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctgtctgagaggttgggaggggttggctctgtggggaaccaaatcgaccaagaaatagct 500

                                                                       
Query: 301 gaaaacgcatggccatgtcagtctgggtcgcgtctgctcagggtggagaacaggtgcacg 360
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gaaaacgcatggccatgtctgtctgggtcgcgtctgttcagggtggagaacaggtgcacg 560

                                                                       
Query: 361 ggtggaccacacttagccatcatccagctgatgtcaactttgaagaacatccccattcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggaccacacttagccatcatccagctgatgtcaactttgaagaacatccccattcct 620

                                               
Query: 421 ttttctatcatcatcatcattttgcctggctgtgtt 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttctatcatcatcatcattttgcctggctgtgtt 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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