BAC Information

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BAC

Clone NameMSMg01-046N19
Chromosome10 (Build37)
Map Location 12,154,075 - 12,154,438
singlet/doubletsinglet
Overlap geneUtrn
Upstream geneEpm2a, EG666732, LOC100039343
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046N19.T7 (MSMg01no046_n19.b1)MSMg01-046N19.TJ (MSMg01no046_n19.g1)
ACCAG277136AG277137
length700715
length of high quality
(start - end)
480 (59 - 538)192 (82 - 273)
definitionCHROMAT_FILE: MSMg01no046_n19.b1 PHD_FILE: MSMg01no046_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:06 2005CHROMAT_FILE: MSMg01no046_n19.g1 PHD_FILE: MSMg01no046_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATGCAGAGAATCCGCGGAATTCTTACTG
TATGTCTTACATGATTATCAAAGCTAGCTGCTAGTTGAAGTGGTAGGACA
GTTTATTCAGTAGAATCCACATGTATGTGTGAGGAGTATGTCTGTACACA
TAGTGGAGTGCTCAGAAGTATTCTGAGCATGTGAGAAGGGGATACTGGCT
TGGCAGTGAGAAAGACAGGGACAGAGCTAAGCAGAAGACAAAAGAAAAGT
GACAAAAGTGTGATGCTGGAGACCAGCTGTGTCTCCAGTTAGAGAAGTTA
GGATAAATCTCCATAAAAACTGGAAGACATTGCCTTCTTACCTAATAATC
TCCTTTCAGAGAAATGGCTTTCGAGGTCCTCAAGGACAAGGCTCCTGAGT
TCTAAGCGATCATCTGCCCATTTCAGGACCACACCAAGGTTTCCGACTCC
TCATTCCTTTTTGATAAGTCCTCTTGGAGTGGTCAGGGCTCATTTCAGTG
TGACATTACACAGACAGGAAATGTTTTGAGCAGCATAGCTTCTACAAGGT
ATCTACTTGTTCCATGCTGTTATATGCAGCTGGAGGTCCTAAGAAGTATG
CCGCCTTGAGCTATCAGAAATCAAGGTGATGCCTGCTCAAGTCTTTTTTC
AGAGGATGCGAAGTGGGTGGATGCAACTATTCCTGATATTGTCCCCTTCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATTGATTCACTCACACA
CACACACAAAATGATACAACCACCTGTCTCAACAATTCTACATGTGTTCA
TGCATACTTACATAAATACATGTATACCTACATATGTACATATATATATA
CACATATGTACATATATATATATATATATATATATATATATATATATATA
TAGAGAGAGAGAGAGAGAGACACATACCTTTTTATATATACATATATATA
TTTGTTGGATGAAACATATTTTTCCAAGCCAATCTTTATATCTTTACCTC
TTGTTTTTATATCTTCTTACACATCAGCTTTTTATTAAATTATCTCTTGG
ACAAACCGTTCCCCCCAAGGGTAACTACTTATATACGGCCACACTCTATT
CTTACCCCAGCTATTTCTTTCCCGCCCTTCACTCCTTCATAGCCCCATTC
TCCCCTATTATCCTTTTCCTTTCTCCCACTTCCCGTATTTTAAATATTAT
TTCCCACACTTTTATTTACCGTTTCTTTTTCTTGCTTTCCTTCTCCACCC
CATTCTTTTTTATCCCTTTCTTATCCTTTGCTTTTCTCCTTTCTCCTTTT
TTATCCCCCCTTTCCCTTTCCCTTTTCCCCTTTTTTTTTCTTCCTTTTTC
CCCTCTTTTACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_n19.b1 MSMg01no046_n19.b1 CHROMAT_FILE:
MSMg01no046_n19.b1 PHD_FILE: MSMg01no046_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:06 2005
         (480 letters)



>mm_chr10_12154075_12154953
          Length = 879

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%), Gaps = 1/365 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgattatcaaagctagctgctagttgaagtggtaggacagtttattcagtagaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acatgattatcaaagctagctgctagttgaagtggtaggacagtttattcagtagaatcc 305

                                                                       
Query: 61  acatgtatgtgtgaggagtatgtctgtacacatagtggagtgctcagaagtattctgagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 304 acatgtatgtgtgaggagtatgtctgtacacatagtggagtgctcagaagtatt-tgagc 246

                                                                       
Query: 121 atgtgagaaggggatactggcttggcagtgagaaagacagggacagagctaagcagaaga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 atgtgagaaggggatactggcttggcagtgagaaggacagggacagagctaagcagaaga 186

                                                                       
Query: 181 caaaagaaaagtgacaaaagtgtgatgctggagaccagctgtgtctccagttagagaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 caaaagaaaagtgacaaaagtgtgatgctggagaccagctgtgtctccagttagagaagt 126

                                                                       
Query: 241 taggataaatctccataaaaactggaagacattgccttcttacctaataatctcctttca 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 125 taggataaatctccataaaaactggaaggcattgccttcttacctaataatctcctttca 66

                                                                       
Query: 301 gagaaatggctttcgaggtcctcaaggacaaggctcctgagttctaagcgatcatctgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gagaaatggctttcgaggtcctcaaggacaaggctcctgagttctaagcgatcatctgcc 6

                
Query: 361 cattt 365
           |||||
Sbjct: 5   cattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space:   408430
Effective search space used:   408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)