BAC Information

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BAC

Clone NameMSMg01-047C01
Chromosome10 (Build37)
Map Location 57,165,746 - 57,166,224
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047C01.T7 (MSMg01no047_c01.b1)MSMg01-047C01.TJ (MSMg01no047_c01.g1)
ACCAG277323AG277324
length695700
length of high quality
(start - end)		486 (46 - 531)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no047_c01.b1 PHD_FILE: MSMg01no047_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:25 2005CHROMAT_FILE: MSMg01no047_c01.g1 PHD_FILE: MSMg01no047_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCCTGCTCATTTAGCCTTGCCTGATCCATCACTTTCTGAAGG
GTTTTGGCATTTCTAGAAAGGAGTTTAGATTGTTTGTGATGCCAGGTCAG
GAGATAAAATGGAGACGTGGGGAGGATAGATGGTCGGCTGATTTCATTCT
GTGAGTCAGAAATCATGGACCAGTTTAGGAGCAAAGATCAGGTGTGGAGG
GAAATGAAGACAGAGAAGGAAGCATGAGGAAAGAAGAGAGACCAGGGGTT
TGGGGATTAGAAACCAGGAGATTGGGGGCTGGAGAGATGGCTCAGTGGGT
AAGAGCACTGGTTACTCCTTGAGGTCCTGAGTTCAAGTCCCAGCAACAGC
ATGGTGGCTCACAGCCATCTGTAATGGGATCTGATGCTCTCTTCTGGTGT
GTCTGAAGAGAGTGACAGCATACTCACATACATAACTTAAATAAAAAATT
CTTTAAAAAAATGAGGAGATTGTGCATTAGGCATTCCTGAAAATTGGGGG
GAGGGGCAGGTAGAAAGATACCAGAGACAACGGTGGCATTGCTGTCATTG
TGCACCATGCACCCGGATTTCTTCTTCATATTCTTCACCAAGCTTATGTT
AGGCACCTTGGAGTCCAGACTTGGGTTCTGCTGCATGGAATGTGC

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGAGACTTTTTAGGAAGAGTTAA
TGCCAATACTTCTCAAATTATTCTTCAAAATAAAAACAGAAGGAGTACTA
TCCAATTCTTTTTAGCAGACCACAGTTATCCTGACACTTAAACCCACATT
AAAAACCAAACAATGAAAGAGAATCACATCAATTACCCTAATGAGCATAG
GAGCAAAAATCCTCAATAAAATACTTGCAAACAAAATACAAAACACAATA
AAAAGATTATGCACCATGATCTAGCAGGCTCTATTCCAGAGATGGATGGA
TAATTCAACATATTTAAATTAATAGATATAATTCCACCATATGAAAAACA
GACTGAAAGAAAAAACCTTACATGATTGTCTTATTAGACGCAGAAAAGTC
CTTTAACAAAGAGTCCTTTATGAAAAAGTCTTAAAGATAAGATATATAAA
GGACATACCTAAGCATGATAAAAAACAAAATCAACATAATAAAGGTGATT
ACAGCAAGCTTACAGCCAACACCAACCTAAACAAAGAAAATCTCAAGTCA
TTTCTATTAAAACCAGGAACAAGACAAAGTTGACCACTTTCTCATTACCT
ATTCAATATATTCCTTTTAAGTCTTAGCTAGAACAATATGGCAACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_c01.b1 MSMg01no047_c01.b1 CHROMAT_FILE:
MSMg01no047_c01.b1 PHD_FILE: MSMg01no047_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:25 2005
         (486 letters)



>mm_chr10_57165746_57166631
          Length = 886

 Score =  872 bits (451), Expect = 0.0
 Identities = 472/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccctgctcatttagccttgcctgatccatcactttctgaagggttttggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattctttccctgctcatttagccttgcctgatccatcactttctgaagggttttggca 420

                                                                       
Query: 65  tttctagaaaggagtttagattgtttgtgatgccaggtcaggagataaaatggagacgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttctagaaaggagtttagattgtttgtgatgccaggtcaggagataaaatggagacgtg 360

                                                                       
Query: 125 gggaggatagatggtcggctgatttcattctgtgagtcagaaatcatggaccagtttagg 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 359 gggaggatagatggtcggctgatttcattctgtgagttagaaatcatggaccagtttagg 300

                                                                       
Query: 185 agcaaagatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaagaagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agcaaagatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaagaagaga 240

                                                                       
Query: 245 gaccaggggtttggggattagaaaccaggagattgggggctggagagatggctcagtggg 304
           || ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 239 gagcagggttttggggattagaaaccaggagattgggggctagtgagatggctcagtggg 180

                                                                       
Query: 305 taagagcactggttactccttgaggtcctgagttcaagtcccagcaacagcatggtggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 taagagcactggttactccttgaggtcctgagttcaagtcccagcaacagcatggtggct 120

                                                                       
Query: 365 cacagccatctgtaatgggatctgatgctctcttctggtgtgtctgaagagagtgacagc 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 119 cacagccatctgtaatgggatctgatactctcttctggtgtgtctgaagagagtgacagc 60

                                                                      
Query: 425 atactcacatacataacttaaataaaaaattcttt-aaaaaaatgaggagattgtgcat 482
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 59  atactcacatacataacttaaataaaaaattctttaaaaaaaatgaggagattgtgcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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