BAC Information

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BAC

Clone NameMSMg01-047L13
Chromosome10 (Build37)
Map Location 111,962,831 - 111,963,246
singlet/doubletsinglet
Overlap genenone
Upstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
Downstream geneLOC100042639, 4921506J03Rik, LOC100042655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047L13.T7 (MSMg01no047_l13.b1)MSMg01-047L13.TJ (MSMg01no047_l13.g1)
ACCAG277688AG277689
length697740
length of high quality
(start - end)
556 (46 - 601)417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no047_l13.b1 PHD_FILE: MSMg01no047_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005CHROMAT_FILE: MSMg01no047_l13.g1 PHD_FILE: MSMg01no047_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAAAAA
TCACATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTTC
AGATAGCCCTGTTATGTCTTCACATTCCCCTTTATCTTATGGTCAAGATG
TTCCCAGGAATGTTTTAACTACAGGGCATACCCAGGTTTGTTTTTCTCTT
TTCTCAGCCCCAGGTAGCCTCTAGGCTCACAAACAACCAGCGATTTCTGA
GTACTTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCATTCCC
CTCTTCTTCTACTAAGTAATTCTAATCTTAGAATTTCAGAAGTCTATATC
TCTATGTGGAGAATAGAAATCATACCTTTTCTATCTTAACTATAAGTTGG
TGTTGACGCTGGAGGACCATAAGCTATAACAAAAACAGAATAAGAATAGT
AAACAGAACTAGGCAGGGACCCTTCTAGCAAGGCTTGAGGGTCTGGGCAT
GACGCAGGTGTACGTAGATCAGATCTCTGGCTGAAACTGGTGAGATGTCT
TTGGTGTACCCCGGCTCTTTCTCTGTAGCCAGTTGTGACCAGACTTCTTT
CTGCACCACTTGTATATCTTTTATTTTAGCATACCGATCTTTATTAN
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTAGCATGTAGTGATACA
TTAAAGACAAATGAAAGGAAAATGAGATCAGATAAATGGGAAAATCCTCG
CTGCATAAAATATGAAAAGATAAAAGAAAATACTTTTTTTTATTGTCGTG
ATCAGACACTATAACCAAGACAATGCATAGAAGAGTTAATTATTGGGATG
TACAGTTTCAGAAGGTTAGAGTCTATGACTATTATTGTGACAGGAGGAGC
TAAGCACGGTGCAGCAGCGGAGAACTCATGGATGCCATCCTAAACTCTTG
TACATCAATGTGTGCAAGGCATCTTGTGTCTCCTGCATAGTAGAAAAGTC
CTTGTCAATGAGCTACATCCCAGATGCCCAAGAGCAATGTCTTAAGGAGC
TGCCTAGAAGGTTCTATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAG
TGTGAGTGGGTGGGTTGGTGACCAGGCCCATTTTTTTTTTTTTCCCCTTC
TTCTCCTTTCCATTTCTCATATACCCGCTTATATTCCCCCCTTACTATTT
TACTTTTTTTCTCTTTTTTCACCATCTCTCCCCTCATTTTTTATCCTCCC
ATACCTTCTAATATTAACAATCAATAATAAACCTTTGTGGTTTTCTCTAC
TAATCCACTACTTTTCTCCTCTATTTTTTATATTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_l13.g1 MSMg01no047_l13.g1 CHROMAT_FILE:
MSMg01no047_l13.g1 PHD_FILE: MSMg01no047_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:07 2005
         (417 letters)



>mm_chr10_111962631_111963447
          Length = 817

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%), Gaps = 1/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggctagcatgtagtgatacattaaagacaaatgaaaggaaaatgagatcagataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctagcatgtagtgatacattaaagacaaatgaaaggaaaatgagatcagataaatg 260

                                                                       
Query: 61  ggaaaatcctcgctgcataaaatatgaaaagataaaagaaaatacttttttttattgtcg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggaaaatcctcgctgcataaaatatgaaaagataaaagaaaatacttttttt-attgtcg 319

                                                                       
Query: 121 tgatcagacactataaccaagacaatgcatagaagagttaattattgggatgtacagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgatcagacactataaccaagacaatgcatagaagagttaattattgggatgtacagttt 379

                                                                       
Query: 181 cagaaggttagagtctatgactattattgtgacaggaggagctaagcacggtgcagcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagaaggttagagtctatgactattattgtgacaggaggagctaagcacggtgcagcagc 439

                                                                       
Query: 241 ggagaactcatggatgccatcctaaactcttgtacatcaatgtgtgcaaggcatcttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagaactcatggatgccatcctaaactcttgtacatcaatgtgtgcaaggcatcttgtg 499

                                                                       
Query: 301 tctcctgcatagtagaaaagtccttgtcaatgagctacatcccagatgcccaagagcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctcctgcatagtagaaaagtccttgtcaatgagctacatcccagatgcccaagagcaat 559

                                                                    
Query: 361 gtcttaaggagctgcctagaaggttctatgccccagtacaggggaatgccagggcca 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcttaaggagctgcctagaaggttctatgccccagtacaggggaatgccagggcca 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)