BAC Information

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BAC

Clone NameMSMg01-048C19
Chromosome10 (Build37)
Map Location 7,629,068 - 7,629,779
singlet/doubletsinglet
Overlap geneMap3k7ip2
Upstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d
Downstream geneLOC100039046, Ust, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048C19.T7 (MSMg01no048_c19.b1)MSMg01-048C19.TJ (MSMg01no048_c19.g1)
ACCAG278007AG278008
length1,1931,248
length of high quality
(start - end)
711 (70 - 780)742 (79 - 820)
definitionCHROMAT_FILE: MSMg01no048_c19.b1 PHD_FILE: MSMg01no048_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:50 2005CHROMAT_FILE: MSMg01no048_c19.g1 PHD_FILE: MSMg01no048_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCCTAAGT
AGTTTTTAACCCTTTATGCTTGAAACTATGACTAATACTGAATCTGATAA
ACACTACATTTTTCTTACCCACAAATACCTATAAAGCTTAATTTATAAAT
TAGGTATATTGAAAGAACAGTAACTCATAGTAAAATAGATTATTAACACT
ATATTAATGAAAGCTATCTAAAATTTTACTTCTCTTAGGGCTAAAAGCAA
ATTATGCATCATAATTAGTAGTGACAATAGTGACCTAAATAGACATGCCT
ATATATTTAACTTCAGCCAGTCAGATTTTTGCACATAATTTCATTCGTAT
ACATATCCTAATGCTTGGCTCAAATACACAGGCTTATTTCATGTCTTAGC
TTGGTACACACATATTCTGTCACTTTCAATGGTGGAAAACGTTTCTAGAT
GATAATACATTTTTGAAATTTACCTGGAATTCAGGATATATACAAAACAA
TGTTCTCAAAAAACTGAATTTCTCTAAAGTGCCTGCCTTATCACAGTTTA
CAAATTTAAAGACACAATCGTTGCACTTAGTTTTAAACCCAAACTTTCTA
TTTTGGGAGTCCACAGTGGGTACTAAGGTCTCAAACATACTCTTAAAAAG
TTATATACGTCACACCTTTGCATGCTCCCCACCCCAGAGTGTAAATAAAC
AAACACACACCTCCCTGAGGAGTCAGCCCATGCCAGAATGCCCACGCTGG
AAACACTTCCCAAGTGGAAGGTTGAGAACATAAAAAATAAACATTTTCTA
GGATTTCGCTTTCCAAACAGTCTCACATTTAATGGATGCACTAACCTTTG
GGTTTTGGTGGCACAGGGCCTACAAATCCAATATTGTCTTAAAAGTTATG
AAAAACGCTGGGGGTTAAAATGGGGTCCTGGAATATTCTTAAGGGACATA
TTTTCTTTCCTTTTTTTTAGTCCCAAAAAACTATATTTTTCCTTTTTATA
TCCCCATATCTTTTTATAATCCTCAAAAAAATGGCCTGGATAGTATACCC
CCTTCTTTTTTTCATTTTCTATATTAATCTTTTTAATACTTTTCTTTATA
ATTTTCTTTATTTTTATGGTATTTCTCTATACTCCTCTTCTCTGTTGTTT
TTTCTTTTATTTATTTATTTTTTCTCTCTCTCTGTCTCTTAAA
TTTTTTTTAGATGAGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCCTTACAGGACCACAGCAGCAAGCTTCAC
TGTCAGAATACCCGAGATGGAAGAGAACCCATGAATAGACTTTGAAACCA
TAAATAAATGCATGCACTGGTCAAAGAAAGTGTGAAGTCTAAAAAATTCC
TAACATAAAATACCCAGGACATCTGGGACTCTATGAAAAGTCCAAATCTA
AGGATGATAGGAATATAGAAAGGACACAATAAAGGCAGTTGGAAGAGGCA
AGTTCACAGCCTGAGTGCATACATTAAAAAATTTGAGAGACCTCTAACTA
GTAACTTAACAGCACACTAGAAAGTTCAACAACAAGAGCAACAGCAGCAA
CAACAACAACAAGTCAAAGGAGTAGATGGCAAGAAATAATCAAACTCTGG
GTCAAAATAAATAAAATATAAACAAACAAACAAGCCAAAATACAAAGAGT
CACTGAAACAGAGTCTGGTTCTTTGAGAAAATCAACAAAACTGACAAACA
CTTATCCAAATAGACTAAAGGCAGTGAGTAGATATCTAAATTTAGAAAAC
TATAAATGAAAAGGAAGACATAACAACAGATACAGGGAATCATAAGTGCA
TACTTTTAAAACACATATTCTAACAAATTACAAAATCTAAAAGATATGCA
TAATTTTCTTGATAGACTTCATTTACACCAAAATTAAAACAAGATCAGAT
AAACACTTAAATAATAAATAAATGATTTAATTTAATGAAATCTATAACCC
ATGGTGAAATAGAAGCAGTAACTATAAGCTAACCAACCACAAAAGGACAG
GACCAGATAGTTGTAGCACAGAATTCTACCAGACTTTCAAAAAGTTAATC
CAATACTCCTCAAATTAGTCCACAAAATAGAAACAGAAATTGCCCAATTC
TTCTTACAAGACACAGTTACCCAAATACCAAAACCCCTTGGAAACCCTAT
TAAGGAAAGAAAATTTCCGAACCATTTCTTAATAAAATCTTAAAAAAAAA
TTGCCAACTGTAATCTAAAAAATGGCTGAAAGTACTTCCCCCCCCGATAT
GGGAGGTTTTCTTCCCAAAAATGCGGGGCCCTTTTAATTTCAAAAATTCC
TATAATGGGTTCCCCCTCTTACAATACTTGTTAAAGAAAACCCCCTGGTC
CTTTATTCATTGTGAGAAAAAACTCTTGTAAAAACCATACCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_c19.b1 MSMg01no048_c19.b1 CHROMAT_FILE:
MSMg01no048_c19.b1 PHD_FILE: MSMg01no048_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:50 2005
         (711 letters)



>mm_chr10_7628869_7629979
          Length = 1111

 Score = 1315 bits (680), Expect = 0.0
 Identities = 704/714 (98%), Gaps = 5/714 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaactatgactaatactgaatctgataaacactacatttttctta---cccacaaat 57
           |||||||||||||||||||||||||||||||| |||||||||||||||   |  ||||||
Sbjct: 200 ttgaaactatgactaatactgaatctgataaatactacatttttcttaaaac--acaaat 257

                                                                       
Query: 58  acctataaagcttaatttataaattaggtatattgaaagaacagtaactcatagtaaaat 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acctataaagcttaatttataaattaggtatattgaaagaacagtaactcatagtaaaat 317

                                                                       
Query: 118 agattattaacactatattaatgaaagctatctaaaattttacttctcttagggctaaaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agattattaacactatattaatgaaagctatctaaaattttacttctcttagggctaaaa 377

                                                                       
Query: 178 gcaaattatgcatcataattagtagtgacaatagtgacctaaatagacatgcctatatat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcaaattatgcatcataattagtagtgacaatagtgacctaaatagacatgcctatatat 437

                                                                       
Query: 238 ttaacttcagccagtcagatttttgcacataatttcattcgtatacatatcctaatgctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttaacttcagccagtcagatttttgcacataatttcattcgtatacatatcctaatgctt 497

                                                                       
Query: 298 ggctcaaatacacaggcttatttcatgtcttagcttggtacacacatattctgtcacttt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggctcaaatacacaggcttatttcatgtcttagcttggtacacacatattctgtcacttt 557

                                                                       
Query: 358 caatggtggaaaacgtttctagatgataatacatttttgaaatttacctggaattcagga 417
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caatggtggaaaatgtttctagatgataatacatttttgaaatttacctggaattcagga 617

                                                                       
Query: 418 tatatacaaaacaatgttctcaaaaaactgaatttctctaaagtgcctgccttatcacag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tatatacaaaacaatgttctcaaaaaactgaatttctctaaagtgcctgccttatcacag 677

                                                                       
Query: 478 tttacaaatttaaagacacaatcgttgcacttagttttaaacccaaactttctattttgg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttacaaatttaaagacacaatcgttgcacttagttttaaacccaaactttctattttgg 737

                                                                       
Query: 538 gagtccacagtgggtactaaggtctcaaacatactcttaaaaagttatatacgtcacacc 597
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 738 gagtccacagtgggtactaaggtctcaaacatactcttaaaaagttacatacgtcacacc 797

                                                                       
Query: 598 tttgcatgctccccaccccagagtgtaaataaacaaacacacacctccctgaggagtcag 657
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttgcatgctctccaccccagagtgtaaataaacaaacacacacctccctgaggagtcag 857

                                                                 
Query: 658 cccatgccagaatgcccacgctggaaacacttcccaagtggaaggttgagaaca 711
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 858 cccatgccagaatgcccaagctggaaacacttcccaagtggaaggttgagaaca 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)