BAC Information

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BAC

Clone NameMSMg01-048D16
Chromosome10 (Build37)
Map Location 117,589,269 - 117,589,918
singlet/doubletsinglet
Overlap geneMdm1
Upstream geneYeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneIl22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048D16.T7 (MSMg01no048_d16.b1)MSMg01-048D16.TJ (MSMg01no048_d16.g1)
ACCAG278048AG278049
length1,2431,278
length of high quality
(start - end)
650 (85 - 734)730 (85 - 814)
definitionCHROMAT_FILE: MSMg01no048_d16.b1 PHD_FILE: MSMg01no048_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:56 2005CHROMAT_FILE: MSMg01no048_d16.g1 PHD_FILE: MSMg01no048_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTCTTTTNNNCCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGAATATAGAGCAAAGCCCTTGAACCCAGCCCAGTATTTCTA
TAAAGCTGGAGCTTGCACTCGGGTGAAGGAGAACCTGTCAAACCAGGTGA
GTCTGATCGCACACGCTCTTCCGGCCGAGCCAGCCACTGCACCATGAGTT
TCACTCACAGTGTGAGGATGGATGGTCCAATAGTAGCACTGCAAATCCCA
CCATCTTAAAATCGTAGTTGTCACCTTACCGGTGTGTGTACTGTTTTTAT
AGCAGTGACCCCGTGGAGATTGACATTGGTTATTAAAGTCATTTTTTTAA
AGCCATGAAGTATCTGATAGTTCTAATGAGTTCAGTTTGCAGGATGATAG
CCCTCTTGGTTGAGTCCTCATGCCATCCAGACCTCAGACTTTGAACTGAA
GGTTCTCTCTATCAATAATGAATGTTCCAGGAAGATTGCTACAGTGTGCA
CCCCTGCATCATGTAGGAAAGGGGTGTGTGCAGCTTGAGGTTCAAGTTCT
ACTCTTGGGGTGTCCTGATGTAGCAGAGAAGCTGGGGCTCTGAAGATTGG
GCAGAGGAGAGGACAGTTATAGCCTCCTGCTGAGAAGCGGGGCTTCTAGT
CAAAGGATAAATGGTAGAAAGTCTATATTACTGTATAATTCGTGTCTTAA
AACTGTTATCTGGACACTTTTCAGCCCTTCTCATGTGCACAAGCTAAATT
ATACCGTTTTTTGGGGTTGGATTGTATAATATCAGATATTCTTTTCTGTC
TATCTTCTAAAGAGGGTATATTGCATTTGTTCTTTGTGACTGCTGGTTCC
GTGAGACTAGTAATCTTGCTACACCCTCCTTCATCTGCTCTTGTCCTAAG
GGGCTCTCTGATCTTTTCTAACGGTTTCTCCTCCTTTTTTCTGTCTTGTT
TAGTGGTTTTCTATACTTTCTCCTCAATTATCTCTTTATTGTTTTTTTAA
TCTTTCCTTTATTGTTTGTTAATTATCATTTATCCTTCTTTTTTTCGCTC
TTTTTTCTATTATCTTTTCTCCTCTCCTTCCCTTTACTTTTCATTATCTT
TTTTTTCTTTTCTCTTTTTTTTATCATTTCTTCTTTCCTTTTTTCTTTCT
TCTTCTTTTTTTTTCTTTTCTTTTTTTTTTATTTTTCCTTCTTTCTTTTT
ATTTATTATTATTTTCTCTTCTTTTCTCTTCACTCTTTATTTT
TGTATATTTTTNNNNAGAGGAGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTTCCTGGACAGAACTGCTCAAA
GGGACAATGAAGAGGAAACAACAGATGACCCCCGAAAGCTTAAGCCTGGA
GAGATCGATCCAAACCCAGAGACCAAGCCAGCCCGGCCCGACCCGATTGA
CATGGATGAGGATGAACTTGAGATGCTCTCTGAGGCTCGAGCCCGTCTGG
CCAATACTCAAGGAAAGAAGGCTAAAAGGAAAGCAAGAGAAAAGCAGTTG
GAAGAAGCCAGGCGCCTTGCTGCCCTCCAGAAAAGACGAGAGCTTCGAGC
AGCTGGCATAGAGATTCAGAAGAAAAGGAAAAGGAAGAGAGGCGTTGATT
ATAATGCTGAAATCCCATTTGAAAAAAAGCCAGCTCTTGGTTTTTATGAT
ACTTCTGAGGAGAATCACCAGGCCCTTGATGCAGACTTCAGGAAATTGCG
ACAGCAGGATCTTGATGGGGAGCTAAGATCTGAAAAAGAAGGAAGAGATA
GAAGAAAAGACAAACAGCGTTTAAAAAGGAAAAAGGAGTCTGATTTACCA
TCAGCTATCCTCCAAACCAGTGGTGCCTCCGAGTCGACTAAAAAGAGAAG
CAAACTTGTGTTGCCTGCGCCTCAGATTTCAGATGCTGAACTCCAGGAAG
TTGTCAAGGTAGGCCAGGCCAGTGAAGTCGCACGGCAGACGGCGGAGGAG
TCAGGAATAACAAACTCTGCTTCTAGCACTCTCCTGTCTGAGTACAATGT
CACAAACAACAGCATTCGCTCTGAGAACACCACGGACACCAGCCTCTCAC
GACAGGATTCTACAGGAAGCTCAGAACCTCATGGCCTTGACCAATGTGGA
CACTCCGTTGAAGGTGGTCTTAATACCCCACTGCATGAGAGTGACTTTCC
TGGTGTGACCCCCAGCAGCAAGTTGTGCAGACTTCCAATAACGTTCTGTC
TACCCCTCTCAGGACCCTTTTTAAGGGAGCTGAAGGGCTGATTCCCCCAA
GGGAATCCACTCCCAAAACCGTTCCCTATTGGCCCCCTCCGGTTAAAACC
CCTTTTTAGAATAGTTTTAATTTTATCCTCAAGAAGGGAGTGGGGACATT
ACGTGGCCCCCTTTTTTTGCAACTATAGTTAGAAAATATTGTGGGAATTC
TCCTCCCCGGTTCTTTTATCTTCCCTTCCCCTAAAAAAGAATTTATATTC
CNTTTCTCTTATAAATTCAATAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_d16.b1 MSMg01no048_d16.b1 CHROMAT_FILE:
MSMg01no048_d16.b1 PHD_FILE: MSMg01no048_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:56 2005
         (650 letters)



>mm_chr10_117589069_117590118
          Length = 1050

 Score = 1218 bits (630), Expect = 0.0
 Identities = 645/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcccagtatttctataaagctggagcttgcactcgggtgaaggagaacctgtcaaacc 60
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 201 cagcccagtatttctataaagctggagcttggacccgggtgaaggagaacctgtcaaacc 260

                                                                       
Query: 61  aggtgagtctgatcgcacacgctcttccggccgagccagccactgcaccatgagtttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgagtctgatcgcacacgctcttccggccgagccagccactgcaccatgagtttcac 320

                                                                       
Query: 121 tcacagtgtgaggatggatggtccaatagtagcactgcaaatcccaccatcttaaaatcg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tcacagtgtgaggatggatggtccaatagtagcaccgcaaatcccaccatcttaaaatcg 380

                                                                       
Query: 181 tagttgtcaccttaccggtgtgtgtactgtttttatagcagtgaccccgtggagattgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagttgtcaccttaccggtgtgtgtactgtttttatagcagtgaccccgtggagattgac 440

                                                                       
Query: 241 attggttattaaagtcatttttttaaagccatgaagtatctgatagttctaatgagttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attggttattaaagtcatttttttaaagccatgaagtatctgatagttctaatgagttca 500

                                                                       
Query: 301 gtttgcaggatgatagccctcttggttgagtcctcatgccatccagacctcagactttga 360
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gtttgcaggatgatagccttcttggttgggtcctcatgccatccagacctcagactttga 560

                                                                       
Query: 361 actgaaggttctctctatcaataatgaatgttccaggaagattgctacagtgtgcacccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgaaggttctctctatcaataatgaatgttccaggaagattgctacagtgtgcacccc 620

                                                                       
Query: 421 tgcatcatgtaggaaaggggtgtgtgcagcttgaggttcaagttctactcttggggtgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatcatgtaggaaaggggtgtgtgcagcttgaggttcaagttctactcttggggtgtc 680

                                                                       
Query: 481 ctgatgtagcagagaagctggggctctgaagattgggcagaggagaggacagttatagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgatgtagcagagaagctggggctctgaagattgggcagaggagaggacagttatagcc 740

                                                                       
Query: 541 tcctgctgagaagcggggcttctagtcaaaggataaatggtagaaagtctatattactgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctgctgagaagcggggcttctagtcaaaggataaatggtagaaagtctatattactgt 800

                                                             
Query: 601 ataattcgtgtcttaaaactgttatctggacacttttcagcccttctcat 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataattcgtgtcttaaaactgttatctggacacttttcagcccttctcat 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)