BAC Information

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BAC

Clone NameMSMg01-048M01
Chromosome10 (Build37)
Map Location 102,527,313 - 102,527,624
singlet/doubletsinglet
Overlap geneLrriq1
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1
Downstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048M01.T7 (MSMg01no048_m01.b1)MSMg01-048M01.TJ (MSMg01no048_m01.g1)
ACCAG278435AG278436
length1,2511,210
length of high quality
(start - end)		316 (12 - 327)622 (81 - 702)
definitionCHROMAT_FILE: MSMg01no048_m01.b1 PHD_FILE: MSMg01no048_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:03 2005CHROMAT_FILE: MSMg01no048_m01.g1 PHD_FILE: MSMg01no048_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATTAAGTGGCGGGCTTGATAAGTTTGCTCATTAATTCATACTGTCAT
AGCTGTTTGGAACTATTCCATAGTGTATACAAATTTAAAATGTGTTATAC
AGAATAAATATGCACAAATGGCATGTCAAAAGTAAGTTTATTTGAGAAAA
CACAATATTTTACATCATTTGTGAGTGAGTGTGAGAAGAAAAGGAAGGAA
AGTGGCAAACTAGATGCAGTGTCTGCTTGTCATCTTATCACTAGAAAGTT
CTAGGACCATCAGGAGGAGACAGTTCCAAAGAATAAAGGGGGAGGGGGAG
AATAGGGAGGGAAGAAGAGAATGNNNANNNNNNTTTTTTTTTTTTTNNNN
NNTNTTNTTTTTNNTTTTTTTTTTTTTTTTTTTTTCTCCCTCCTTTTTTT
TTCTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTCTTCTTTTCCTTTC
TTTTTTTCTTCTTCTTTTCTTTTCTTCTCTTTTCTTTTTCTTTTTCTCCT
TTTCTCTTCTCTTTTTCTCCTTTCTCTTTTTCTCTTCTTTCCTTCTTTTT
TCTTTCTTCTTCTTCTTTTTTCTCTCTTCTCTTTTTCCCTTCCTCTTCCT
CTTTTTTTCTCTTTTTTCTTTTCTTTTCTTTTTTTCTCTCTTTTTCTCTT
CTTTTTTTTTTCTTCTTTTCTTCTTCTTTTTTCTTCTCTTCCTCTCTCTT
CTTTTTTTTTTCCTTTTTTTTTCCTTTCTCTCCTTTTTTTTTTTTCTTCC
TTCTCCCTCTTTCTTTCCTTTTTTTTCTTTTTCTTTTCTTTTCTTTTTTT
TCCTTTCTTCTCTTTTTTTTCCTTTTTTTTTCCTTCCTTTTTCTTTTCTC
TTTCTCTTTCCTTTTTTCTCTCTTCTCTCTTTTTCTCTTCTTCTCTTCTT
TTCTCTTACTTTTTTTCCTTCTTTCTCTTTCCTCTCTCTCTTTTTCTCTC
TTCCCTCTTTTCTTTTTCTCTCTCTTTTCTTTCCTTCTTCTTCTTTCTTC
TTTTTCTCTCTCTTCTTCTCTTCTTCTTTCTCTCTTTCTCTCTCCTTTTT
TTCCTCTCTTTTCCTTCCTCTTTTCTCTCCTTTTTCTCTTTCTTCTACTT
CCTTTCTCCTTCTTCTTCTTTCTTTTCCTTTCTTCTTTCTTCTTTCTTCC
TTCTTTCTTTCTCTTTCTTCTTTATTTTATTATTTATTTACATTTACTCT
C

NNNNTTATCAAGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTTAAATTCCTATCTTTGAAGAATTGTGTT
GGGATTTTGCTGTGGATTGCATTGAATCTATAGATTGCCTTTGGTAGGAT
GGCCATTTTTACTATGTTAATTCATGAGCATGGCATACCTCTGACCCATA
ATTGTTCCTGTCTGAAAGAATTGCAGGGAGGGAAATGGAGAGGAGCCTAG
GGAAAAGAAGGTCCAGCAACAGGCCCAAAGTGGGATCCAGCTCAAGGGGA
GGTCCCAAGGCCTGACACTATTACTGAGGCTATGGAGTGCTCACAAAAAA
GATCTATCATGACTGCCCTCCAAAAGACCCAACAAGTAACTGAAAGAGTC
AGAGGTAGACATTTGCACCCAACGAATGGACAGAAGTATCTGACCCCTGT
TGTTGAATTAAGGAAGGATTAAAGAAGCTGAGGAGAGGGCGACCCTGTAG
GAGGACCAGCAGTCTTAATTAATCTGGACCCCCGAGATCTTTCAAACACT
GACCTACCAACCAGCCAGCATATACCAGCTGATATGAGGCCCCCAACACA
CATGCAGTAGAGGACTGCTGGGTCTGTGTTCATTCAGAGATGATGCACCT
AACCCTAAAGATACTGGAGGACCCAGCGAGTTTAGAGGTCAGGTGAGGTG
GCGGTTAGGGGAATTCCTGTGTATATGNTTTCTTTCTTTTTTCCTCTTTC
CTTTTCTTTTTTCCTTTTTCTCTCCTTTTTTTTTTTTTTTTCTTTTCTTC
CTCCTCTTTCTCTTTTCCTCCCTTCCTCTTTCTTTCTTCTCTCTTTTTTT
TTTTTTCCTTCTCTCTTATTTTTCTTCTCTTACTTTTCTTCATTCTTACT
TTCTTTATTTTCTTTTTTATTTCTTATCTCTCCTTTTCTTAATTTTCTTC
ATTATTTCTACTATCTTTTTTTTTTTCTTTTCTTTTTTATTTTATTCCTC
TTTTATCTCTATATCCATTATTTTCCTCTTTTTCATTTATTATTATCTTC
ATTCTTCTATTTATATCCTATTTCTTCTTACCTCTTCACTCTACATCTAT
TTTTTTTACCTTTTCTTCTTTCTCATTCTTCTTATCCTCCCTATTTCTTT
TCTTTTCCTTTCTTTTCTTTTTTATTTATTTCATTTTTTTTCTTATTTAT
TTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_m01.b1 MSMg01no048_m01.b1 CHROMAT_FILE:
MSMg01no048_m01.b1 PHD_FILE: MSMg01no048_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:03 2005
         (316 letters)



>mm_chr10_102527113_102527828
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%), Gaps = 2/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcgggcttgataagtttgctcattaattcatactgtc-atagctgtttggaactattcca 59
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 512 gcgggcttgataagtttgctcattaattcata-tgtcaatagctgtttggaactattcca 454

                                                                       
Query: 60  tagtgtatacaaatttaaaatgtgttatacagaataaatatgcacaaatggcatgtcaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tagtgtatacaaatttaaaatgtgttatacagaataaatatgcacaaatggcatgtcaaa 394

                                                                       
Query: 120 agtaagtttatttgagaaaacacaatattttacatcatttgtgagtgagtgtgagaagaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agtaagtttatttgagaaaacacaatattttacatcatttgtgagtgagtgtgagaagaa 334

                                                                       
Query: 180 aaggaaggaaagtggcaaactagatgcagtgtctgcttgtcatcttatcactagaaagtt 239
           ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aagaaaggaaagtggcaaaccagatgcagtgtctgcttgtcatcttatcactagaaagtt 274

                                                                       
Query: 240 ctaggaccatcaggaggagacagttccaaagaataaagggggagggggagaatagggagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctaggaccatcaggaggagacagttccaaagaataaagggggagggggagaatagggagg 214

                        
Query: 300 gaagaagagaatg 312
           |||||||||||||
Sbjct: 213 gaagaagagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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