Query= MSMg01no049_e04.b1 MSMg01no049_e04.b1 CHROMAT_FILE:
MSMg01no049_e04.b1 PHD_FILE: MSMg01no049_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
(831 letters)
>mm_chr10_97691929_97693158
Length = 1230
Score = 1371 bits (709), Expect = 0.0
Identities = 787/817 (96%), Gaps = 8/817 (0%)
Strand = Plus / Minus
Query: 15 gaattcaaagataaaggtactgttctgtatccatgcttatatttaatcttgttgcacatt 74
|||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 1171 gaattcaaagataaaggtactgttatggatccatgcttatatttaatcttgttgcgcatt 1112
Query: 75 gctagcgaggaggtccacacgggaaagaattatagacatcctctgagggtggctgctagt 134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 gctagtgaggaggtccacacgggaaagaattatagacatcctctgagggtggctgctagt 1052
Query: 135 cagttgccagatctccagtcagtcacacagtcatgacaaccagtctgattttcaatgaac 194
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 cagttgccagatatccagtcagtcacacagtcatgacaaccagtctgattttcaatgaac 992
Query: 195 aagcctgcagataagatgttttccatgccataatatttatttccttttaattgtagtgag 254
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 991 aagcctgcagataagatgttttccatgccatcatatttatttccttttaattgtagtgag 932
Query: 255 attctaaataagtagactcaattaaccattggcaagatgctttacttctggaatttatga 314
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 931 attctaaataagtagactcaattaaccattggcaagacgatttacttctggaatttatga 872
Query: 315 aataaagtctgtatgatgtatgccataattgctatatattaatagaaatgtaatatgata 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 aataaagtctgtatgatgtatgccataattgctatatattaatagaaatgtaatatgata 812
Query: 375 cccattcttaaggaaatattcctatttatctgactttccaaaaaaaaaaaaaaagcactg 434
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 811 cccattcttaaggaaatattcctatttatctgactttcc-------aaaaaaaagcactg 759
Query: 435 aaaatgaattttttcagagacggatatcagactctggatcataacatagtttgagttccc 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 -aaatgaattttttcagagacggatatcagactctggatcataacatagtttgagttccc 700
Query: 495 tttcttctagtgaaataaatgaataaacatatgttgtgtaaaagtgctcacatgagatgt 554
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tttcttctaatgaaataaatgaataaacatatgttgtgtaaaagtgctcacatgagatgt 640
Query: 555 aaggctacattatccatgactaagatttctactgcttgtgataaagcatgattataagtt 614
||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 639 aaggctacattatccatgattaagatttctactacttgtgataaaacatgattataagtt 580
Query: 615 cttaaaaaagaaattctggaaatagacaacccacagactttaaattgggtactcttttga 674
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 579 cttaaaaaataaattctggaaatagacaacccacagattttaaattgggtactcttttga 520
Query: 675 gtattgtgatgaaatctttaagtttctctgtactatgagagacaggaatcatctctctat 734
||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
Sbjct: 519 gtattgtgatgaaatctttaagtttctctgtaccattagagacaggaatcatttctctgt 460
Query: 735 tcactgtatatttgcactgtatatgctaacctaccagcaaattacttgataggcattcca 794
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 459 tcactgtgtatctgcactgtatatgctaacctaccagcaaattgcttgataggcattcca 400
Query: 795 gttattggattaactaccacagtatcaaaatgattgt 831
||||| |||||||||||||||||||||||||||||||
Sbjct: 399 gttatgggattaactaccacagtatcaaaatgattgt 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 831
Length of database: 1230
Length adjustment: 10
Effective length of query: 821
Effective length of database: 1220
Effective search space: 1001620
Effective search space used: 1001620
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_e04.g1 MSMg01no049_e04.g1 CHROMAT_FILE:
MSMg01no049_e04.g1 PHD_FILE: MSMg01no049_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
(770 letters)
>mm_chr10_97677954_97679122
Length = 1169
Score = 1353 bits (700), Expect = 0.0
Identities = 753/772 (97%), Gaps = 4/772 (0%)
Strand = Plus / Plus
Query: 2 tcttattttttatcatgatcccaaagtgaacacatgaagaggagaagggttatttccaag 61
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 202 tcttattttttgtcatgatcc-aaagtgaacacatgaagaggagaagggttatttcccag 260
Query: 62 agtctaaatatatcctatgggataccattgtgtctcattttgacttatgagaaaatgaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctaaatatatcctatgggataccattgtgtctcattttgacttatgagaaaatgaat 320
Query: 122 ggaatgagaagttttggaagaatgcactagaaattgcatgtttaactttttttatgttgt 181
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgagaagttttcgaagaatgcactagaaattgcatgtttaactttttttatgttgt 380
Query: 182 tcaatatctattcctagctattgtcctaggaggcagggaacaaataggtaacccctttaa 241
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 381 tcaatatctattcctagctattgtcctagtaggcagggaacaaatagataacccctttaa 440
Query: 242 acacccttttccccctcaaaaatagaataatagtaactattccataggtagccttatcat 301
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaccttttttcccctcaaaaatagaataatagtaactattccataggtagccttatcat 500
Query: 302 gtacacgcttagcaaaatacttaatgtgaagatataataattattatcatgtgcagtacc 361
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 501 gtacacgcttagcaaaatacttaacgtgcagatataataattattatcatgtgcagtacc 560
Query: 362 tataatagaatgtaataatatgattaattattgatattattttttattattgatagtcct 421
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 561 tataatagaatgtaataatatgaataattattgatattatttttgattattgatagtcct 620
Query: 422 ttattatgaatatttattaatcacagattatgactatatttcctatctataaaactatgc 481
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ttattatgaatacttattaatcacagattatgactatatttcctatctacaaaactatgc 680
Query: 482 cccccc---tttataattagttttactggacatccttcctagatgactggtcacccttga 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccccccgtttataattagttttactggacatccttcctagatgactggtcacccttga 740
Query: 539 cctcatctgctcttagcccacactattgcagagaatacttgcatctccaaatgttcacaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctcatctgctcttagcccacactattgcagagaatacttgcatctccaaatgttcacaa 800
Query: 599 aaatctctcttctgaacttccctagaaatagatttgtcgctctttccatttcttggaaat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaatctctcttctgaacttccctagaaatagatttgtcgctctttccatttcttggaaat 860
Query: 659 tttctatatttctactacactatggtgccaagcagagtttttataaccatgattcttttg 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 861 tttctatatttctactacactatggtgccaagcagagtttttataaccatgatccttttg 920
Query: 719 tcaggaaaaatatcttccagattaacacccttgaggaaaggactcccagttg 770
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 921 tcaggaaaaatatcttccagattaacacccttaaggaaaggactcccagttg 972
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 770
Length of database: 1169
Length adjustment: 10
Effective length of query: 760
Effective length of database: 1159
Effective search space: 880840
Effective search space used: 880840
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
