BAC Information

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BAC

Clone NameMSMg01-050M19
Chromosome10 (Build37)
Map Location 108,837,426 - 108,838,010
singlet/doubletsinglet
Overlap genenone
Upstream genePawr, EG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502, LOC100042506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050M19.T7 (MSMg01no050_m19.b1)MSMg01-050M19.TJ (MSMg01no050_m19.g1)
ACCAG279763AG279764
length1,0891,156
length of high quality
(start - end)
65 (140 - 204)574 (125 - 698)
definitionCHROMAT_FILE: MSMg01no050_m19.b1 PHD_FILE: MSMg01no050_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:35 2005CHROMAT_FILE: MSMg01no050_m19.g1 PHD_FILE: MSMg01no050_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTAAAGACCCCCANANANANACGCNANCACNCNNAAACCCCTATAA
GACCCCCACANNNGCGNANAAAACACGGGCACGCNCNCGACAAACAAAGG
ACAGAACCCCCACCTCCTCGACTTGCTTCCAGAAAAGTGAATTTAATAAC
CAGTTTCAATTCTAGCGAAAAAATATTATTGCGCTTTCTAGAAACCCTGC
ACGCAAGCCCAGCGATCAGCTTTAGCTATGCTGATGTAAAATATATCATG
TCTACCAATGTTTTTAAAACTCTGATGAAATTAAACTGGTTTTTTTCTGC
TGCAATTGAGATTCAGACATCCAACATGTTTTTTTTTTTAGCCAACNAGA
CANGCCAAACGCAGCAGACCAGAAGGACCCCCCCGCCCNANAGACGGACN
AACAAGCAAGGCACACACCCACAAACACCCACACCCACACACACACACAG
ACCGACACACACACACCGACACAGACACCCACAGACCCACCGCCNCAGCC
ACAGNCACACACAGACACACACAGCCACACAGACACAGACACAGACACAC
ACGCACACACACAAAACCACCCCACCCAAACCCCCCAAACAAACACAANC
ACAAGGAGGACAGGNGCCAAACCCCACACCNAGAGAGAACGAAACACAGA
GNCCCAGGACCCCAAGAGCCCNCACAAAAAACCCCCNCAAACAAGAAGCC
CAAACAGGCCTTTTGAAGAAACCGGCANNANGAAAACCACCCAAGGCCCA
AGACAAAGAAAGCCCAGGAACCCGGAAAAAAAAACCGAACAACAAGAACC
CCCAAAAAAAGACAACCGAACCAGGGAACCCCAAAAGCCCAACAGGCAAA
AGCAAAAACGCGGGGAGGACAAGNCCCCAAAAAGCCCCGGGAACGGCCCA
AAACACCCCCAAAAAACCAAAAAAAAAAACCCGAAAAAAACCAAGCCGGC
GCNAAAAACAAAAAAAACCCGGGAAAAAAAACCCACGCCAACCAAAAAAA
ACCAAAAGCAACACCCCCGCCGGAAAAAAAAAACCCCAAAAAACAAAAAG
AAACACCGCAAAACAACCCAAAGACGCCCCCAAACCACC
CTTTTTTTTACCTTGTGAGGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTAAAAGTCCCGCAACTTTTGGCACTC
TGGACCACCGGGGCCTTTATACTTCAGATCTCTGTACCTCATACTCAGCA
AGCAGTATTTTGTCCCCAGAGGAGCTATGACTGAAGTTAGTTTATTAATA
ATAAGCTTGAAAGATACAGTATAAAGACAGAGAAGAATCATTCATGCTGC
ATAGACAGTCCCTAGGAGAACGTGGTCCTAGAATAACTGGTAGTTTACAA
AGCCATGGAAATGGATATTTTCTACTGAATCAGAAACTCTAAAAAAGACT
CTAGTTTGTGCGACATAGTGTGGAAGCAGAGAAGTCAGATAGGATTTGTG
TGAAGATTTTGTTTGCATTGCTTCATATAACAGCTCTTACTTGGATGCTC
CATCCTTAACTGGCTTGAAGGGATTTCATATACTACCAAAGAAAAGTAAG
CACCGATCTCACTAACCTTTGAACTCTGCAGGCAATAACAATGCTTTGCC
TAACAATGTTATTCCCATTGGTAGAATACTGGCATGAATATTACGGGAGG
AACCAACCACTTTTTAAATGGCTCTAAGGCCTAGTAATAACGCCAAGAAC
CTATGACTAGATCAGTCCTCGAGGAGAACTAAATACTAGTATTCTTTTAC
ATGGACATAGTATTAAAATGATACCTAATGACTCATTTATTGCTCAGTGC
ATCTCTCATTCCTTACTAAGGAAGCTTTTAATTGAAGTAGGTGGCACTTT
GCATAGAAGCTCTCAATCAATCAGTAGGCAGTACCTATGAGATTTTGGAG
TTCTCAGCTTTTAAGGGAACATATTTTTCATCCCGCTTATCTTAAGCTCC
AGGATCTTGCCTAGGGTTAATTTTAGAAAGAATATAATGACCCTAGAGGA
ATTTTATTCCATATTTTGTGTATGGGGGGTGAAGTATGGTATATAACATA
AAATTTGGCCCCCCTAAAAAAAATTAAGGGTAAAATGGTTAAATTTAAAT
TTTATTTTTAACAATTACTTGGTTACTTTGTTTCCTATTTTATNCTTTCA
TAAGTGTGTTCCAAACACTTGTTTGTTTTTTATCATTGTTAAGTCCCTCT
ATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_m19.g1 MSMg01no050_m19.g1 CHROMAT_FILE:
MSMg01no050_m19.g1 PHD_FILE: MSMg01no050_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:36 2005
         (574 letters)



>mm_chr10_108837067_108838040
          Length = 974

 Score =  984 bits (509), Expect = 0.0
 Identities = 561/585 (95%), Gaps = 11/585 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatctctgtacctcatactcagcaagcagtattttgtccccagaggagctatgactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 cagatctctgtacctcatactcagcaagcagtattttgtccccagaggagctatgactga 885

                                                                       
Query: 61  agttagtttattaataataagcttgaaagatacagtataaagacagagaagaatcattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 agttagtttattaataataagcttgaaagatacagtataaagacagagaagaatcattca 825

                                                                       
Query: 121 tgctgcatagacagtccctaggagaacgtggtcctagaataactggtagtttacaaagcc 180
           | |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 824 tcctgcatagacagtccctaggagaatgtggtcctagaataactggtagcttacaaagcc 765

                                                                       
Query: 181 atggaaatggatattttctactgaatcagaaactct-----------aaaaaagactcta 229
           |||||||||||||| |||||||||||||||||||||           |||||| ||||||
Sbjct: 764 atggaaatggatatcttctactgaatcagaaactctaaaaaaaaaaaaaaaaaaactcta 705

                                                                       
Query: 230 gtttgtgcgacatagtgtggaagcagagaagtcagataggatttgtgtgaagattttgtt 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 704 gtttgtgcgacatagtgtggaagcagagaagtcagataggatttgtgtgaagatacagtt 645

                                                                       
Query: 290 tgcattgcttcatataacagctcttacttggatgctccatccttaactggcttgaaggga 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgcattgcttcatataacagctcttacttggatgctccatccttaactggcttgaaggga 585

                                                                       
Query: 350 tttcatatactaccaaagaaaagtaagcaccgatctcactaacctttgaactctgcaggc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 584 tttcatatactaccaaagaaaagtaagcaccgatctcactaacctttgaactctgcaagc 525

                                                                       
Query: 410 aataacaatgctttgcctaacaatgttattcccattggtagaatactggcatgaatatta 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aataacaatgctttgcctaacaatgttattcccattggtagaatactggcatgaatatta 465

                                                                       
Query: 470 cgggaggaaccaaccactttttaaatggctctaaggcctagtaataacgccaagaaccta 529
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 464 cgggagtaaccaaccactttttaaatggctctaaggcctagtaataacgtcaagaaccta 405

                                                        
Query: 530 tgactagatcagtcctcgaggagaactaaatactagtattctttt 574
           |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 404 tgactagatcggtcctagaggagaactaaatactagtattctttt 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)