BAC Information

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BAC

Clone NameMSMg01-051D14
Chromosome10 (Build37)
Map Location 47,042,252 - 47,042,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632
Downstream geneLOC668252, LOC100042387, LOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051D14.T7 (MSMg01no051_d14.b1)MSMg01-051D14.TJ (MSMg01no051_d14.g1)
ACCAG280057AG280058
length1,280684
length of high quality
(start - end)
240 (119 - 358)427 (75 - 501)
definitionCHROMAT_FILE: MSMg01no051_d14.b1 PHD_FILE: MSMg01no051_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:36 2005CHROMAT_FILE: MSMg01no051_d14.g1 PHD_FILE: MSMg01no051_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGACCCTTAAATTTTCATGGGGTTATTTGATTTTC
TGAAGTCCACCTTTTAGAGTTCTTTACCCCTGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTTCTG
CTCAGGAATTAGTAAGGAGAAAGTGTTTTCCCTTGTCTAGTCCCTGATTT
TAGTGGGATTGCTTCCATCATCTCTCCATTTAGTTTGATGTTGGTTTTTT
TTTTTTAGCATATTGGTTCTATTTCGTTTTTTTTTTTTTTTTACTCTTTT
TTTTTTTCCCCCCCCCCTTTATTTTTTTCTTTTTCTCACAAAAATATGTT
TTTCTTTCTTTTTTTCTTTTTTTTTTTTTTTTTATTTTTTTTTCTTCTTT
TTTTTTTCTTTTCTTATTTTTTTTTTTCTTTTTCTTTTCTTTTTTTTTTT
TTTTTTTTTCTTTTTTTCTTTTTTTTTCTTTTTTTTTTCCCTTTTTTTTT
TTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTGTTTTTTTCCTTTTTTTT
TTTTTTGTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTC
TTTTTTTTTTTTTCTTTTTTTCTTATTTTTTCTCTTTTTTTTTTCTTTTT
TTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTTCATTTCTTTTTTTTTTCTTTTTCTT
TATTTCATTTTTTTTATCTTATTTTTTTTTTTTTTTTTTTTTCCTTATCT
TTTCTTATTTCTTTTCTATTATTTTTTTTCTTTTTTTTTTTTTTTCTTCA
TTCTATATTTTTTCTTCTCTTTTTATTTTATTTTCTTTTTTTTTATTTTT
TTCTTTTTCTTTTTTTTTTTTCTATTCTTTTTTTTTTTTTTATTTTTTTC
TTTTTCTTTTTTTTTTATTTTTCTTTTTTTCTCTCTTTATTGTTCTCTTT
TATTCTCTCCTTCTTTTTTTTCTTTTTATACCCCTTTTTTTTACTTTTTT
TTTCTTTTTTTTTTTACCCTTTTTTTTATTCTCTTTTATTTTTTCTTTTA
TTTTCTTCTTTTCTTTTTTTTTTTTTTTTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGAAAGACTAGGAAAATGTTCTTC
AAAGAACTTCATTTGAAAATTAAATTGGTGGGTTTTTTTTTCAAGTTGTT
TCATTCTTTCAATACACAATTCAAAATAGTTCCCAAAATGCTTTCATATG
TCTTTACATTTTTTTCAATCCTGCTTCATATGAATTGATCGTTCACTTGG
TTTTAAAATGCAATTGTTATTTATCAGTTAATAGTTCTAAATGAAGAAGT
ATGTTTTATTATCTATATTTATATCTTGTTCTCATTCGTACCAAAAACTC
TTTATACAACAACCATTTTTTTTGCAATGCACACCATCATTGTTTAAAGT
TCAATAATGTTCCCCCATGCCTCCCTAGTTTCTTGACTTTAAAATCTTTT
TATCATTTCACTATTTCTTTAATTTTGAAGTATTTTTATCATTCTTTTTT
CTATTCTTCTAAAATGATTGTAAAATTTATTTCTTTCTTTTTATGTGATA
ATATCTTTATTCTTCCTATGAATTATAAATAACATATACAATTATTTCAA
TTATTTTTAAAGCTAGTCGCTTTATCTTTTTATAATCGCAATTGATTCTC
TTTTAAACCATAATTTCCCAGTTTATCTATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_d14.g1 MSMg01no051_d14.g1 CHROMAT_FILE:
MSMg01no051_d14.g1 PHD_FILE: MSMg01no051_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:36 2005
         (427 letters)



>mm_chr10_47042052_47042876
          Length = 825

 Score =  694 bits (359), Expect = 0.0
 Identities = 409/429 (95%), Gaps = 10/429 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaagactaggaaaatgttcttcaaagaacttcatttgaaaattaaattggtgggtt 60
           ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 201 tatgaaagactagaaaaatgttctccaaagaacttcatttgaaaattaaattggtggg-t 259

                                                                       
Query: 61  tttttttcaagttgtttcattctttcaatacacaattcaaaatagttcccaaaatgcttt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 260 tttttttcaagttgtttcattctttgaatacacaattcaaaatagttcccaaaatgcttt 319

                                                                       
Query: 121 catatgtctttacatttttttcaatcctgcttcatatgaattgatcgttcacttggtttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 catatgtctttacatttttttcaatcctgcttcatatgaattgatcgtccacttggtttt 379

                                                                       
Query: 181 aaaatgcaattgttatttatcagttaatagttctaaatgaagaagtatgttttattatct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 aaaatgcaattgttatttatcagttaatagttctaaatgaagaagtatgttttattgtct 439

                                                                       
Query: 241 atatttatatcttgttctcattcgtaccaaaaactctttatacaacaaccattttttttg 300
           ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 440 atatttacatcttgttctcattcgtaccaaaatctctttatacaacaaccattttttt-g 498

                                                                       
Query: 301 caatgcacaccatcattgtttaaagttcaataatgttccccc---atgcctccctagttt 357
           ||||||||||||||||||||||||||||| | ||||||       |||||||||||||||
Sbjct: 499 caatgcacaccatcattgtttaaagttcagtgatgttc----ttgatgcctccctagttt 554

                                                                       
Query: 358 cttgactttaaaatctttttatcatttcactatttctttaattttgaagtattttta-tc 416
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 555 cttgactttaaaatcttcttatcatttcactatttctttaattttgaagtatttttaatc 614

                    
Query: 417 attcttttt 425
           |||||||||
Sbjct: 615 attcttttt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 825
Length adjustment: 9
Effective length of query: 418
Effective length of database: 816
Effective search space:   341088
Effective search space used:   341088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)