Query= MSMg01no052_k14.b1 MSMg01no052_k14.b1 CHROMAT_FILE:
MSMg01no052_k14.b1 PHD_FILE: MSMg01no052_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:20 2005
(584 letters)
>mm_chr10_94194384_94195367
Length = 984
Score = 1027 bits (531), Expect = 0.0
Identities = 565/583 (96%), Gaps = 12/583 (2%)
Strand = Plus / Plus
Query: 4 gaattcttcatctgattcccattcagaacatttgtgatccataagaggaggttaaaatag 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcatctgagtgccattcagaacatttgtgatccataagaggaggttaaaatag 263
Query: 64 taacattaaacaagcatttgtgagcagttgatacagtctttgtggatgactttgagtgtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taacattaaacaagcatttgtgagcagttgatacagtctttgtggatgactttgagtgtt 323
Query: 124 tcagaactagtgggcatagttagtagctacagaggtgctatataactagtaagagtgctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagaactagtgggcatagttagtagctacagaggtgctatataactagtaagagtgctc 383
Query: 184 agagtggcacaagaaagtgtgacttaatttttgcagtttcacaataaaacttgagtagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagtggcacaagaaagtgtgacttaatttttgcagtttcacaataaaacttgagtagca 443
Query: 244 gaagaattacttcttatggataagtaaagatgttccctgcccctctgtggtagggattga 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagaattacttcgtatggataagtaaagatgttccctgcccctctgtggtagggattga 503
Query: 304 acctcttgccaagtagactaacactgctactgagccacaatttcagcccaagaaagtggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acctcttgccaagtagactaacactgctactgagccacaatttcagcccaagaaagtggt 563
Query: 364 tctgaaaatggagtgggtcgcatgttagtacagggtttacggtattgtatcatcttagtt 423
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 564 tctgaaaatggagtggggcgcatgttagtacagggtttacagtattgtatcatcttagat 623
Query: 424 ggtgaagcagtggcaggctgtgagacattgactccaaccttgaaagttctactgtaggta 483
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 ggtgaagcagtggcaggctgtgagacattgactccaacct----------actgtaggta 673
Query: 484 agagactaccaaataacat--catattacagaaatagctttcaggaaaggaatcaattga 541
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agagactaccaaataacatatcatattacagaaatagctttcaggaaaggaatcaattga 733
Query: 542 tgtgacagacttcattattgcctcattcaagacgtgatcacag 584
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgtgacagacttcattattgcctcattcaagacgtgatcacag 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k14.g1 MSMg01no052_k14.g1 CHROMAT_FILE:
MSMg01no052_k14.g1 PHD_FILE: MSMg01no052_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:20 2005
(505 letters)
>mm_chr10_94330041_94330945
Length = 905
Score = 953 bits (493), Expect = 0.0
Identities = 502/505 (99%)
Strand = Plus / Minus
Query: 1 cacacagagaatcaaaggagttccttgtgctggaagagaggcatctccacgcaaggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cacacagagaatcaaaggagttccttgtgctggaagagaggcatctccacgcaaggatcc 646
Query: 61 ttagagtttgtgaacagcgcactaatacaatgccaggaaggaacatagggacgatgtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttagagtttgtgaacagcgcactaatacaatgccaggaaggaacatagggacgatgtcta 586
Query: 121 caaagtcaggccaacttctcacaatgtcaagactcccatttaacaagcctcataaattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 585 caaagtcaggccaacttctcacaatgtcaagactcccatttaacaagcctcatgaattcc 526
Query: 181 tacaagtaagaagatattatttcctctgtattagtgctggtccttgcttagacataatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tacaagtaagaagatattatttcctctgtattagtgctggtccttgcttagacataatag 466
Query: 241 gaccacagtggtgttgctgtggaccacggtacccaaaggatggtctgtgtgctcattatg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaccacagtgatgttgctgtggaccacggtacccaaaggatggtctgtgtgctcattatg 406
Query: 301 ttgggaggggcgttacaatattcaggttctgagaccagcctcaggtctgcagagtcatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttgggaggggcgttacaatattcaggttctgagaccagcctcaggtctgcagagtcatgg 346
Query: 361 tggcttagaatacagctctggtgttgatatttccctaaagcctttctgattctgaccaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tggcttagaatacagctctggtgttgatatttccctaaagcctttctgattctgaccaac 286
Query: 421 agctgggtttgatttcctgctgcctcagatccagcattggggtttcaggaggtaccgaaa 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 285 agctgggtttgatttcctgctgcctcagatccagcattggggtttaaggaggtaccgaaa 226
Query: 481 gcagcatttctctactgctgactta 505
|||||||||||||||||||||||||
Sbjct: 225 gcagcatttctctactgctgactta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
