BAC Information

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BAC

Clone NameMSMg01-053A09
Chromosome10 (Build37)
Map Location 27,715,830 - 27,716,086
singlet/doubletsinglet
Overlap genenone
Upstream geneLama2, LOC100040385, LOC100040961
Downstream geneLOC100040401, Ptprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A09.T7 (MSMg01no053_a09.b1)MSMg01-053A09.TJ (MSMg01no053_a09.g1)
ACCAG281358AG281359
length703745
length of high quality
(start - end)
262 (46 - 307)---
definitionCHROMAT_FILE: MSMg01no053_a09.b1 PHD_FILE: MSMg01no053_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:49 2005CHROMAT_FILE: MSMg01no053_a09.g1 PHD_FILE: MSMg01no053_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCG
GAATTCTCCTTGTTCCCTGCGAAGACAGGACTCTATCCCTAGCATCAGGG
ACAACTGTTGAGCATTTCAATATCACTCTATCACTCTAGAGTCGTTCATT
GTTGATAGATTGTAAAAAACAAATTTAATTTATTTGCATGTCATTATATT
ATGTGCCTGCATAAATTTATGTTGTGTGTGTCAGTGTTGTGGAAAACTTT
GACGAATCAGCTCTTGCCTTCCACTTGTTTTCCCACCTCCACCTCCTAGT
CTGTCTTCGTTGTGCTGGCTGTTAACTGCATTTTGTTTGTTTTCGTTTCT
TTTACTGTGTATTGCAAGGATAGTCCCAACTCATCATGCCTGTATGGCAA
GTATTTAAACACATTGACCAACCTTGCCTTCCCCACGAATACTACTTGCA
TACATCTTTAACAGTTGCATGACATCTTATCTTCTTCCTAAGTCATTTTA
AAATCTTCTCAACTGAAGCCTTAACATCTGTATCCCATTTCTTATCCTTG
AAACTTGTCTGCTTTACTCTACTACTTCCCTTTCCCCTTCGCTCTCCTTT
TATTAATCCCTATCCTGCTTCCACCCCTTACTTGATCATACCCCCCCTAT
TTCATCCCCTTAAACCGCCTTAAATCTCTTTACCCCAATCCTCTAACTCA
TAC
ACGATGTTTTGAGAGGCCTGGAGGGGACTGTTCACAGAGGGGGGTGANNN
AAGGAATTTTCCAAAAAAGGCGGTGTTATTCTCGACTTGACCTTACCCAA
AAGACCGACAATTTTACCCCAAAATAACCCGATTGCTAACCCCCTGATAT
ATTGATATGTTTATATATATTTATATATACCTATATACGCATATACATAT
GTATATGATACGCTTATACATCCGTATCCACATATGAACATATATATGAA
TTTTTATAAAACCATCCTTTCACTCTCCTCTTTTTTCTCTTCATTGCTTA
TACTAATGCAGTCCTATTTTTTTTCATCCACTTATACACAAGAATCGTGA
TCACTTATTTTGTCTTACCCCCCTTTCTTTTTCCCTCTCTTCTATCCTCT
TCTCCTCCGTCATCCAATTTTCTTCTTTACTCTTCTCTTTTTCACCCATA
TTTCACCCCACCCATATCTACACTATTCTCTCCATCGTCCATTTCTCCAT
ACCTATATCTCTATTATACATTTTCCCAATTTACAATTTTTTAATCCACC
TTTATCCCCATTACTTCCCCTCCCTACTCTATCATACAGCTCCTACTTTA
ATTACCCCCACTTTCTCCCACATTTCCCCACTTTTCACTCCTATTCCATC
CTATTTCACTTTTCACCATATACTCTTTTATCTCGCATATCTTCCTCCCC
CTATCACTATTCACAATCTCCCTTTATTTTCTATTTTCTACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a09.b1 MSMg01no053_a09.b1 CHROMAT_FILE:
MSMg01no053_a09.b1 PHD_FILE: MSMg01no053_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:49 2005
         (262 letters)



>mm_chr10_27715626_27716286
          Length = 661

 Score =  429 bits (222), Expect = e-125
 Identities = 249/262 (95%), Gaps = 9/262 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctccttg----ttccctgcgaagacaggactctatccctagcatcagggacaac 60
           |||||||||||||    ||    | |||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctccttgggaatt----gtgaagacaggactctatccctagcatcagggacaac 260

                                                                       
Query: 61  tgttgagcatttcaatatcactctatcactctagagtcgttcattgttgatagattgtaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tgttgagcatttcaatatcactctatcactctagattcgttcattgttgatagattgtaa 320

                                                                       
Query: 121 aaaacaaatttaatttatttgcatgtcattatattatgtgcctgcataaatttatgttgt 180
           ||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 321 aaa-caaatttaatttatttgcatgtcattatattatgtgcctatataaatttatgttgt 379

                                                                       
Query: 181 gtgtgtcagtgttgtggaaaactttgacgaatcagctcttgccttccacttgttttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgtgtcagtgttgtggaaaactttgacgaatcagctcttgccttccacttgttttccca 439

                                 
Query: 241 cctccacctcctagtctgtctt 262
           ||||||||||||||||||||||
Sbjct: 440 cctccacctcctagtctgtctt 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 661
Length adjustment: 9
Effective length of query: 253
Effective length of database: 652
Effective search space:   164956
Effective search space used:   164956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)