BAC Information

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BAC

Clone NameMSMg01-053B02
Chromosome10 (Build37)
Map Location 13,711,977 - 13,712,381
singlet/doubletsinglet
Overlap geneHivep2
Upstream geneSf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053B02.T7 (MSMg01no053_b02.b1)MSMg01-053B02.TJ (MSMg01no053_b02.g1)
ACCAG281390AG281391
length710710
length of high quality
(start - end)
523 (49 - 571)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no053_b02.b1 PHD_FILE: MSMg01no053_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:52 2005CHROMAT_FILE: MSMg01no053_b02.g1 PHD_FILE: MSMg01no053_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAACCATATTCTTTAAGTATTTAAAGCAATGTTAGAATATA
TATCATATATTATATATTATATTATACATTATATTATATATTATATATCA
TATAGTATCATATATCATATATTATATTAATTTATATACATAAATATATA
AAATTTAAAATATAAATAAATATATAAATATATTTATTATAATATATATA
TATATTTTCTTTTGGTAAGCAAAACCCAATTTTAAACAATTTATTATCCT
TAAAATCAATACTAGAAATATCACTATCATGTTACAAAGTTTGGCTGCCA
ATTCATGAATGCATAACAGTGTAAATTTTAATGTTTTATTAAAGAGACAT
TGTTTTAAATCTTATCTCTTGTAAGTCTAGTTTCTAAGATAAGAATCACA
TAAAATATTATCTTAATTAGAAGTATCCCTAGAGGCCTAGTTTTCTGGGC
TGGTATATGCCACCTGTTGTTATTTAAGATGACTTCAACCCTGAGTTACC
AATTTAAATCTAACTTTGTTACCAAAGCTACTCTTTTAAATCAAAATCAA
GAATGCAGAGCATATTTATACCTTTAAGATCAGACGAAAACTAAATGGAG
CAGCTACCCCAATTTTATAAATTTATACCATTCATAGAATTTTACTCTTT
TTCCTCCAAT
CCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAAGAGCCAGGTGAGAGATT
TTTCCAGGAAAACGTGAGGAGATGGATGAATGGTACCTGGGCACAGGTAA
GCAGACATGTGGCAGAATGTACGTTAAAAATCATTGGGTTATCCATGTTT
TGATCTAGTCCAAGTAGAGTCTAGTTATATGACCAAGATATTTGTAAGTA
TATTTTGAGTCTGAGCTATGTTTCTGAGAGCAAGGAGTAGGAGGCAGAAC
CAGGTCTAACGTCTGCAATAACATCGAACAAAAATCCCCAATGTCAGGTG
TGAAACTTTTCCTTGTGTCAGGACCTATTTTTCAAGGGCTCCTGGGAAGT
TCTTGGTGTTTGTAGTCACAGTGCAGAGAGCTGTGGAACAGATGTTCAAG
CACTAAACTCTGGTGCAGGTCCTCGGATGAGAATCTGGACTCCACCATAG
ACTGATGTATGATACTACCCAGCCTGCTTAGACCGCTGCGTCTCCAGATT
TTCAGCTGTTCTCTGTGGCATTACGCCACAGAACAGAGGTTGCCCACCTA
TCCTGAAACATAAGCACATTTCTACATGTTAAACTTCTGAAATCAATGCC
TTCTTTCAATTAAAATGCTTCCTTTGCTAAAGCTCTCTCAAATACCACTT
TGACGGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_b02.g1 MSMg01no053_b02.g1 CHROMAT_FILE:
MSMg01no053_b02.g1 PHD_FILE: MSMg01no053_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:52 2005
         (446 letters)



>mm_chr10_13711536_13712381
          Length = 846

 Score =  775 bits (401), Expect = 0.0
 Identities = 404/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 42  ggagatggatgaatggtacctgggcacaggtaagcagacatgtggcagaatgtacgttaa 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ggagatggatgaatggtacctgggcacaggtaagcagacatgtggcagaatgtacgttaa 787

                                                                       
Query: 102 aaatcattgggttatccatgttttgatctagtccaagtagagtctagttatatgaccaag 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaatcattgggttatccatgttttgatctagtccaagtagagtctagttatatgaccaag 727

                                                                       
Query: 162 atatttgtaagtatattttgagtctgagctatgtttctgagagcaaggagtaggaggcag 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atatttgtaagtatattttgagtctgagctatgtttctgagagcaaggagtaggaggcag 667

                                                                       
Query: 222 aaccaggtctaacgtctgcaataacatcgaacaaaaatccccaatgtcaggtgtgaaact 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaccaggtctaacgtctgcaataacatcgaacaaaaatccccaatgtcaggtgtgaaact 607

                                                                       
Query: 282 tttccttgtgtcaggacctatttttcaagggctcctgggaagttcttggtgtttgtagtc 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 606 tttccttgtgtcaggacctatttttcaagggctcctgggaagttcttggtgtttgcagtc 547

                                                                       
Query: 342 acagtgcagagagctgtggaacagatgttcaagcactaaactctggtgcaggtcctcgga 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acagtgcagagagctgtggaacagatgttcaagcactaaactctggtgcaggtcctcgga 487

                                                        
Query: 402 tgagaatctggactccaccatagactgatgtatgatactacccag 446
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgagaatctggactccaccatagactgatgtatgatactacccag 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)