BAC Information

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BAC

Clone NameMSMg01-053H23
Chromosome10 (Build37)
Map Location 36,262,931 - 36,263,192
singlet/doubletsinglet
Overlap geneHs3st5
Upstream geneLOC100041585, LOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053H23.T7 (MSMg01no053_h23.b1)MSMg01-053H23.TJ (MSMg01no053_h23.g1)
ACCAG281698AG281699
length743725
length of high quality
(start - end)
262 (44 - 305)138 (73 - 210)
definitionCHROMAT_FILE: MSMg01no053_h23.b1 PHD_FILE: MSMg01no053_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:25 2005CHROMAT_FILE: MSMg01no053_h23.g1 PHD_FILE: MSMg01no053_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGAATCCGCGGAATTCCTT
TGGCATGTGCCTAATGGTACCAACAGAGCCTCTCCTCTCATTTTAATAAA
GCAGACTTAGAGGAGGTGAGGCCAAGGAGGCTGACTTTTCACAAGAAGTC
ACCCAGAGGCTGAAAAGAGAGCACTTTGGTCATGATCTAAGAAATCCTTT
CTCATTATCCACATATGCGCCAGAGGAAATGAATTCTCTAGAAAGTATTT
TCTTCATAACCGAAGCTTGTAAGATACTTACAATACAAAGAGAATTGCCC
GGGGCATGGATTTAAGTATTTTATAAGTGAAATTTTTCCTATAGAACTGA
CTTGCCAATCTTATCTATATATGTATTTCTTTACGTATTACCCAGTGTAT
TGAATTACATAGTAACCAATTGTGTTGAAATGTCATATATTTTTTTGTGC
CAAGCATCATTTTGTTTTGCCTCTGCTTCCCTATTTTTGCCTTTTCGCTC
TCGTCTTTTCTGCCCCCGTTCGCTTTTCTGTTTCCTTTACGCCGCCCTTT
TTTCTTGCATTTCCCGCCCCCCCTTTCCCTCCTTTTTTTTTTTCCACTTT
TTTGCCCTATCTCTCCGTCCCTTCCCTCCTTTCCTTGTCTCGCCCGACTA
TCCAAGAGTCTTTTCCACCTTTTCTTTTTTTGGCTTATGTTCCTGTATTT
TCCATCCCCCTATTCTTATCCCTTTTTATCTCTGCTTTCCTGC
GCTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCCCCAATTCCAGTCAGTACACATGGTCATAATTTTTGTTTA
GAAAGAGCAATGGCTAGATATGTGATTGTTCATTGATTCATGAGCTATGT
CAGCGGGTTAGCTGGATGCTCAGGGACTTGTAAAGAGCGTGATTTTTAAG
CTGCTGAAAAAGACATCTGGAGAAGTAGTATGTAGATAGATCTCTCCAAA
TAGGCTAAGGATGTGAAGACACTTGTGTCTTATGTAAATACTTATCACAA
GGTGACTTCAGCTGAGGAGTTCAATAATAATGTACATAGGATGACCTACC
TGTTCTGTAGACAGTCAACCTCTTTCCCCAGCCATCCCTGTCATTGTTCA
TGTGTCCATGAACAATGCGGCCATGGTAGCATATAACGCAATTATTTATG
TATGGTCTTGACAGCATGGGCTTCCATTCACCCCGGTTCATCTGTATGCA
CTTGCTGCTGAGTGCTACGCCCGCCAGCAAGCATATCGCCCGCTTTTGTG
TGCGTCACTTCGTCCCCTTTTTCAGCCATCTTATACGATTGCGCTCTCCA
TTGAATATACGTTTCATTGCAATCCCCTTATCCCCGCATTCCCCTGATAT
TACTTTTAACGCCCTTTCTCCCCACACCTCCCATGTTTTCTCCTCACCTT
CTCGTCTTTTGACTGCCCTTCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_h23.b1 MSMg01no053_h23.b1 CHROMAT_FILE:
MSMg01no053_h23.b1 PHD_FILE: MSMg01no053_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:25 2005
         (262 letters)



>mm_chr10_36262731_36263392
          Length = 662

 Score =  484 bits (250), Expect = e-141
 Identities = 259/262 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctttggcatgtgcctaatggtaccaacagagcctctcctctcattttaataaagca 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 attcctttggcatgtggttaatggtaccaacagagcctctcctctcattttaataaagca 403

                                                                       
Query: 61  gacttagaggaggtgaggccaaggaggctgacttttcacaagaagtcacccagaggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gacttagaggaggtgaggccaaggaggctgacttttcacaagaagtcacccagaggctga 343

                                                                       
Query: 121 aaagagagcactttggtcatgatctaagaaatcctttctcattatccacatatgcgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaagagagcactttggtcatgatctaagaaatcctttctcattatccacatatgcgccag 283

                                                                       
Query: 181 aggaaatgaattctctagaaagtattttcttcataaccgaagcttgtaagatacttacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggaaatgaattctctagaaagtattttcttcataaccgaagcttgtaagatacttacaa 223

                                 
Query: 241 tacaaagagaattgcccggggc 262
           |||||||||||||||| |||||
Sbjct: 222 tacaaagagaattgcctggggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)