BAC Information

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BAC

Clone NameMSMg01-053I04
Chromosome10 (Build37)
Map Location 28,454,697 - 28,455,091
singlet/doubletsinglet
Overlap geneE430004N04Rik
Upstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053I04.T7 (MSMg01no053_i04.b1)MSMg01-053I04.TJ (MSMg01no053_i04.g1)
ACCAG281707
length692702
length of high quality
(start - end)
---392 (74 - 465)
definitionCHROMAT_FILE: MSMg01no053_i04.b1 PHD_FILE: MSMg01no053_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:26 2005CHROMAT_FILE: MSMg01no053_i04.g1 PHD_FILE: MSMg01no053_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCCCTATT
CATTGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGTAAATTTTCTGTAGTATGCTGA
GATGCAGTTTTTGCCTTTTGTCCTGCTCAGTGTCCTCTGGCTTCCCCGAA
TCTCTTTACTGAATCTGCTTTTATGTCTAGCATTAATTTGGAAAGACGTT
CCTTATTATTTCTTCATGTTTCTCTGCAATATCTTCTCTTGACATTGCTA
TAATGAATATTTTGTATCTTCTGATTTTTATGGTACTTGGATATTCTGGG
ATTTTTAAAGATGTATTACTGTATTTCCTGATTGTTTTTCTAGAAGATTT
TGAGATCGCCCCCCCCCCTTCACCTTGCTCTAAGAGTGATTCAGATATGT
GAGCCTGACCATAGAGCTTATTTTGTTTCATCAAAATGTGTACTTTTGTT
AGAGCCTGTATGCATTATAATTTTCTTTCTTGCTTATCAGCCATGATTGA
CAGCTGTTGAGGCCTATATATATATATATATATATATAGCGTGATATGCA
CTATATTATAGTGTGACAGGCTCTATATATGCCTATAATGCAACAGAGGA
CTTGCTGTATTATAACGCTTATTTTTTCTGCAAGCTCCCAATTTTCAATT
TGAACCTTCTGCCCTTTGAACTATGAACTTTTCTTGAAATTTCTGCCTTG
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_i04.g1 MSMg01no053_i04.g1 CHROMAT_FILE:
MSMg01no053_i04.g1 PHD_FILE: MSMg01no053_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:26 2005
         (392 letters)



>mm_chr10_28454496_28455291
          Length = 796

 Score =  692 bits (358), Expect = 0.0
 Identities = 386/398 (96%), Gaps = 9/398 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtaaattttctgtagtatgctgagatgcagtttttgccttttgtcctgctcagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttggtaaattttctgtagtatgctgagatgcagtttttgccttttgtcctgctcagtgt 261

                                                                       
Query: 61  cctctggcttccccgaatctctttactgaatctgcttttatgtctagcattaatttggaa 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 262 cctctggcttccccgaatctctttactgaatctgcttttatgtttagcattaatttgg-a 320

                                                                       
Query: 121 agacgttccttattatttcttcatgtttctctgcaatatcttctcttgacattgctataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacgttccttattatttcttcatgtttctctgcaatatcttctcttgacattgctataa 380

                                                                       
Query: 181 tgaatattttgtatcttctgatttttatggtacttggatattctgggatttttaaagatg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tgaatattttgtatcttctgatttttatggtccttggatattctgggatttttaaagatg 440

                                                                       
Query: 241 tattactgtatttcctgattgtttttctagaagatttt----gagatcgccccccc-cc- 294
           ||||||| ||||||||||||||||||||||||||||||    |||||||||||||| || 
Sbjct: 441 tattactatatttcctgattgtttttctagaagatttttctagagatcgcccccccacca 500

                                                                       
Query: 295 cttcaccttgctctaagagtgattcagatatgtgagcctgaccatagagcttattttgtt 354
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 c--caccttgctctaagagtgattcagatatgtgagcctgaccatagagcttattttgtt 558

                                                 
Query: 355 tcatcaaaatgtgtacttttgttagagcctgtatgcat 392
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcatcaaaatgtgtacttttgttagagcctgtatgcat 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 796
Length adjustment: 9
Effective length of query: 383
Effective length of database: 787
Effective search space:   301421
Effective search space used:   301421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)