BAC Information

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BAC

Clone NameMSMg01-053I24
Chromosome10 (Build37)
Map Location 116,503,828 - 116,504,227
singlet/doubletsinglet
Overlap genenone
Upstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2
Downstream geneFrs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053I24.T7 (MSMg01no053_i24.b1)MSMg01-053I24.TJ (MSMg01no053_i24.g1)
ACCAG281744AG281745
length696703
length of high quality
(start - end)
298 (73 - 370)397 (79 - 475)
definitionCHROMAT_FILE: MSMg01no053_i24.b1 PHD_FILE: MSMg01no053_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:30 2005CHROMAT_FILE: MSMg01no053_i24.g1 PHD_FILE: MSMg01no053_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGCCAGATCACTTAGATAACAAAAGGAGATCAAAGGGTTAATAA
TTGAAAAGGAAGAAGTCAAAATATCACTATTTACAGATGGTATGAGAATA
TAATTAAGTGACCCCAAAAATCTACCTGAGAACTCCTAAACCTGATAAAC
AATTACAGCAAAGTCGCTGGATATAAAATTAACTCCAACAAACCAGTAAC
CTTCCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAACCAA
CACCCTTCACAATAATCACAAATAATATATTTATACCCTAGTGCGAATCT
AACTAAGCAAGTGAAAGATGTCTATGACCACAACTTCAAGTCTCTGAAGA
AAGAAATCGAAGATCTCAGAAGATCTCCAATGCTCATGGATTGGCAGGAT
TAATATAGTAAAAATGGCCAACTTGCTAAAAGCTATCTACCTATTCAATA
TAATCCCAATCAAAATTTCAACTCAATTCTTCATAGATTTAGATAGAGCA
ATTTCCAAATTCATCTGGAATAACAAAAATCCCAGAATAGTGAAAACTAT
TCTCAACAATAAAAGAACTTGTGGGGGAATCACCTTCCCTGAACCTAAGT
TGTACTACAGAGCAATTATGATCTACAACTGTATGTTATTGGTACA
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCTACAGAGAGCTTGCTGTA
GCCCAGGCACCCGCCCACTAAGCAATGTAGTCTTGCTTTTGTGAAATACA
TATTCTGATTACATCCGTTTCATACACCAGGAAATTGAGGCACAGACGTA
ATGTAGCTAGGGGCAGTCACTTAACAGAATTCACCAAAGGAATTCCAACC
ATAGGCAAGAAAGACTGAGGGCGGCGGGACGGGGAGAGGGCGTCATAAGA
CAGGATAAAGAGCCAAGAGAACCCGAGGAGTAACAGATGAGAGGAATAAG
CAAGGGTGGCCCCTGGACCCTGCAACATTCCCAGTTCAAAAAATGCTACA
CAAGTTATAAAATACTTAGAGACAAACATTTGGGGGGGGGGTGTAAAATG
ACACATTCAGCCAGTGGGACTTTTGGAAATAGCTTTCAGTCAGTCAACTC
AGAACATTTGGAGCTTAGTTCCTAGCGAACGCAGGTGCTAGAGGAGGAAT
AGACCACAGATTGCTGGGAGAAGACAGTCTCTAGAGCCCCCCTTCCAGGG
GACTGAACTCCGTATTGCCTCTCAGTTCCAAATCTCCCGGAATGTTCGGT
TCTGTCTCCTCTGCTCCCATTCCCCAGTCCTTAATGCTCTCCTTATTCTT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_i24.g1 MSMg01no053_i24.g1 CHROMAT_FILE:
MSMg01no053_i24.g1 PHD_FILE: MSMg01no053_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:30 2005
         (397 letters)



>mm_chr10_116503510_116504309
          Length = 800

 Score =  706 bits (365), Expect = 0.0
 Identities = 391/401 (97%), Gaps = 5/401 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctacagagagcttgctgtagcccaggcacccgcccactaagcaatgtagtcttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aagctacagagagcttgctgtagcccaggcacccgcccactaagcaatgtagtcttgctt 659

                                                                       
Query: 61  ttgtgaaatacatattctgattacatccgtttcatacaccaggaaattgaggcacagacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttgtgaaatacatattctgattacatccgtttcatacaccaggaaattgaggcacagacg 599

                                                                       
Query: 121 taatgtagctaggggcagtcacttaacagaattcaccaaaggaattccaaccataggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 taatgtagctaggggcagtcacttaacagaattcaccaaaggaattccaaccataggcaa 539

                                                                       
Query: 181 gaaagactgagggcggcgggacggggagagggcgtcataagacaggataaagagccaaga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaaagactgagggcggcgggacagggagagggcgtcataagacaggataaagagccaaga 479

                                                                       
Query: 241 gaaccc---gaggagtaacagatgagaggaataagcaagggtggcccctggaccctgcaa 297
           ||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaacccgaggaggagtaacaaatgagaggaataagcaagggtggcccctggaccctgcaa 419

                                                                       
Query: 298 cattcccagttcaaaaaatgctacacaagttataaaatacttagagacaaacatttgggg 357
           ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 418 cattcccggttc-aaaaatgctacacaagttataaaatgcttagagacaaacatttgggg 360

                                                    
Query: 358 -ggggggtgtaaaatgacacattcagccagtgggacttttg 397
            ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 359 tggggggtgtaagatgacacattcagccagtgggacttttg 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 800
Length adjustment: 9
Effective length of query: 388
Effective length of database: 791
Effective search space:   306908
Effective search space used:   306908
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)