BAC Information

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BAC

Clone NameMSMg01-053L01
Chromosome10 (Build37)
Map Location 33,869,594 - 33,870,045
singlet/doubletsinglet
Overlap genenone
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneDse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053L01.T7 (MSMg01no053_l01.b1)MSMg01-053L01.TJ (MSMg01no053_l01.g1)
ACCAG281837AG281838
length708706
length of high quality
(start - end)
274 (42 - 315)453 (77 - 529)
definitionCHROMAT_FILE: MSMg01no053_l01.b1 PHD_FILE: MSMg01no053_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:40 2005CHROMAT_FILE: MSMg01no053_l01.g1 PHD_FILE: MSMg01no053_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
CTCCTCTGACCAACAGACTGGGAGGAAGAAGAGCTCATTACCAGCCAGAT
AAAGTGCTAGTTAATCGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAG
CCAGCATGCTGTTCAGCCTCCGGGCAGTCGGCTTCAAGGTCCGCCCTATG
CGGAGCCCCCGCCCTGCGTAGTGTGTCAGCCATGCGCAGAGAGACAATGC
GCAGAGAGGCAATGCGCAGAGAGGCAATGCGTAGAGAGACAATGCGCAGA
GAGGCAATGCGCAGACTCATTCATTCTCAGAGAGGATCTAAGGAAAATAC
AACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGTTGCGCCCACGCT
CCGGTATAATATGTGCAGATTAAAGAACTCGCCGAGCCGGTCCGTAAATA
CTTAATCAACGCTAATTTTATCTTGGTGCATCTAGATAGGCTTGTCTGGC
ACGGTTCCATCTCCTGTCGATTGTCAAATGATTGTTTATTCCGTTCACCC
CACCATTGCCCCATATATGTTTTGCATATTGTTCTTGTTATGAAGCTGTA
TCTGTGCATTCCCTAATACACGTATTTTGTTTTGATTCCCGACTATAAAA
GCTTGTACTTTTTCCTGTTATCGCCTCACGGATCTTATCCCATTCACCTG
TTTACTAT
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGTTTTTTAAAGAAATT
TCTTGGATGATTTTAAGCAACCAAGTAAAAGATCATGCTAAAATACATCA
GATTTTTTCTTAATGAGATATGTTTTTTATCAAGGATGGGGTATACTTAG
GACAAACTAAGGAACTCTTTGTATCTTTAATTAAACCAAGCAAGTCTCCC
TTGAAACTGAGCAGTCAATATGGACTCTGTCTCAGTGCAGCGCACAGTGA
AAGGAATGTTTCAAGTTTGTGGCTAATCTATGAGCTGTTGTTCAGTACTA
AGCAGGACTTTTGAGTCCCAGCCTCTAAGGAAATATGAGCCTCGTTAGCA
CAGACAGTTAGAGGCTGTGTGGTGAAAGCAACCTAGTTTGGATTTTCGGC
TGATTAGTTTTTTTAAGCTTTCATAGTGATGCTATGAAAACATTCTTTGG
ATATAATTCCTGAAATTGTTTAAGTCACTAGCTCTAGTGTTGAACACCTT
TAATACTAACGCTTGGGAGGTAGAGACAGGTGGATCTTTGTGAGTCCTAG
GTCAACTATCTATATAGCACGTCTTCCGTCCCGCCAGGGATATGCAACGA
TAGACTATTCCTACGGAAAATCAATCTTTTACAAGCCCGATAGCGGGGCT
ATACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_l01.g1 MSMg01no053_l01.g1 CHROMAT_FILE:
MSMg01no053_l01.g1 PHD_FILE: MSMg01no053_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:40 2005
         (453 letters)



>mm_chr10_33869394_33870245
          Length = 852

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%), Gaps = 1/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttttgttttttaaagaaatttcttggatgattttaagcaaccaagtaaaagatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttgttttgttttttaaagaaatttcttggatgattttaagcaaccaagtaaaagatcat 593

                                                                       
Query: 61  gctaaaatacatcagattttttcttaatgagatatgttttttatcaaggatggggtatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gctaaaatacatcagattttttcttaatgagatatgttttttatcaaggatggggtatac 533

                                                                       
Query: 121 ttaggacaaactaaggaactctttgtatctttaattaaaccaagcaagtctcccttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttaggacaaactaaggaactctttgtatctttaattaaaccaagcaagtctcccttgaaa 473

                                                                       
Query: 181 ctgagcagtcaatatggactctgtctcagtgcagcgcacagtgaaaggaatgtttcaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgagcagtcaatatggactctgtctcagtgcagcgcacagtgaaaggaatgtttcaagt 413

                                                                       
Query: 241 ttgtggctaatctatgagctgttgttcagtactaagcaggacttttgagtcccagcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttgtggctaatctatgagctgttgttcagtactaagcaggacttttgagtcccagcctct 353

                                                                       
Query: 301 aaggaaatatgagcctcgttagcacagacagttagaggctgtgtggtgaaagcaacctag 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 aaggaaatatgagcctcgttagcacagacagttagaggctgtgtggtgaaagcaacatag 293

                                                                       
Query: 361 tttggattttcggctgattagtttttttaagctttcatagtgatgctatgaaaacattct 420
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 292 tttggattttcggctgattag-ttttttaagccttcatagtgatgctatgaaaacattct 234

                                            
Query: 421 ttggatataattcctgaaattgtttaagtcact 453
           ||||||||||||| |||||||||||||||||||
Sbjct: 233 ttggatataattcttgaaattgtttaagtcact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space:   373006
Effective search space used:   373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)