BAC Information

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BAC

Clone NameMSMg01-054K20
Chromosome10 (Build37)
Map Location 111,419,443 - 111,419,802
singlet/doubletsinglet
Overlap geneKrr1
Upstream geneZdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneGlipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054K20.T7 (MSMg01no054_k20.b1)MSMg01-054K20.TJ (MSMg01no054_k20.g1)
ACCAG282547AG282548
length682718
length of high quality
(start - end)
322 (19 - 340)370 (75 - 444)
definitionCHROMAT_FILE: MSMg01no054_k20.b1 PHD_FILE: MSMg01no054_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:55 2005CHROMAT_FILE: MSMg01no054_k20.g1 PHD_FILE: MSMg01no054_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTTTCCAAAGAGGATCCGCGGAATTCCTGATTTCTCCAAAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAGATTTATTGGTC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGCTATCACAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTCCCCCTTCTATCTT
GTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGTAGA
CTATTAATAACTGCTTCTATTTCTTTACGGGATATGCGACTGTTTACAAG
GTCTAATTGATTCTGATTCAACTTTGGCACCTGTTATCTGTCCCAAAATT
TTGTCCATTTCGCCCAGACTTTCCTGTTTTGTTGATTATCACCCTTTTTA
CAACCGATCCTGATGACGCTATTGAATCTCCG
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTAAGAAGTCGCAGTGTCCTTGGGG
TTAGGAAGAGTGTGGCATCAATTAGTGACTGGTCACATAAGAGGTAAATA
CAAACTGAGGTTAATGCAAATGTGGAGCTAGGATAGAAGGCGTGTTTGTG
ACCCACACAGCTGACTAATTCAGGTAGGATCAAATGTCAGAGTGTCAGCA
AGGTGTGAAAAGCAATCAGATGAGTCTGGGGGAACCTGAGACTCCAAGAA
GGCAGAACCATCTCAGAATGGATAGAAGCTATGGCACAAAAGAACAGTGA
AAGGCTCTAGGCCAGGTGTGCCTGTGTAGGCCAGGTGTGGCTGTGCATGC
TTTTGGTCCACCCCCCCCCCCCACCCAGGGAGGGTAAAGCAGGAGGACAG
AGCTCAAGGCCAGCCAGGGCTACAGGACTAGACCCTGTCACAGAGGAGAG
GGGAGAAGCTAAGAGGAAGAGGGGACCCAAACAAAGCCACTGTCTTAATT
CTTGTACTTTCTCACTTCAAAGTCCCTTGAGGTCAATGTCATCACCTCAC
TTAGGCTTGAGGACCGGTATCCACAGTCAGGTCATATAAAATTATCTTAC
TCCCCAAGAGGTGTGTAACCCTAGCCCAGCGCCTGCTGTTTTCAAGAAAC
TTAAGGTGCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_k20.g1 MSMg01no054_k20.g1 CHROMAT_FILE:
MSMg01no054_k20.g1 PHD_FILE: MSMg01no054_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:55 2005
         (370 letters)



>mm_chr10_111419261_111420030
          Length = 770

 Score =  611 bits (316), Expect = e-179
 Identities = 352/370 (95%), Gaps = 10/370 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaagaagtcgcagtgtccttggggttaggaagagtgtggcatcaattagtgactggtc 60
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cctaagaagtcacagagtccttggggttaggaagagtgtggcatcaattagtgactggtc 483

                                                                       
Query: 61  acataagaggtaaatacaaactgaggttaatgcaaatgtggagctaggatagaaggcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acataagaggtaaatacaaactgaggttaatgcaaatgtggagctaggatagaaggcgtg 423

                                                                       
Query: 121 tttgtgacccacacagctgactaattcaggtaggatcaaatgtcagagtgtcagcaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgtgacccacacagctgactaattcaggtaggatcaaatgtcagagtgtcagcaaggt 363

                                                                       
Query: 181 gtgaaaagcaatcagatgagtctgggggaacctgagactccaagaaggcagaaccatctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 362 gtgaaaagcaatcagatgagtctgggggaacctgagactccaagaaggcagaacgatctt 303

                                                                       
Query: 241 agaatggatagaagctatggcacaaaagaacagtgaaaggctctaggccaggtgtgcctg 300
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 302 agaaaggatagaagctatggcacaaaagaacagtgaaaggctctaggccaggtgtggctg 243

                                                                       
Query: 301 tgtaggccaggtgtggctgtgcatgcttttggtccaccccccccccccacccagggaggg 360
           || ||||||||||||||||||||||||||||||||||||          ||| |||||||
Sbjct: 242 tgcaggccaggtgtggctgtgcatgcttttggtccaccc----------cccggggaggg 193

                     
Query: 361 taaagcagga 370
           ||||||||||
Sbjct: 192 taaagcagga 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)