Query= MSMg01no054_p02.b1 MSMg01no054_p02.b1 CHROMAT_FILE:
MSMg01no054_p02.b1 PHD_FILE: MSMg01no054_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:14 2005
(420 letters)
>mm_chr10_110244489_110245306
Length = 818
Score = 665 bits (344), Expect = 0.0
Identities = 394/416 (94%), Gaps = 13/416 (3%)
Strand = Plus / Plus
Query: 6 ggaattcagacta-tttccgcacattccactttaataacaaaaactccctctctaatgag 64
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcagactagttt--gcacattccactttaataacaaaaactccctctctaatgag 263
Query: 65 ttccatggaaggctctggacatattctttcttcttcccctgcttgactagaagtggaatg 124
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 ttccatggaa-gctctggacatattctttcttcttcccttgcttgactagaagtggaatg 322
Query: 125 aagagccctggtgctggcacggcctgactggctggtagtttgttgttgctgttgtggttg 184
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 aagagccctggtgttggcacggcctgagtggctggtagtttgttgttgctgttgtggttg 382
Query: 185 tggttgtggttttgttttgttttgactcacttctattatactttattgttctcatctcta 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 383 tggttgtggttttgttttgttttgaatcacttctattatactttattgttctcatctcta 442
Query: 245 gagtgaggaattgaagaaatatgacaaattcacctcacgaggccattccaacgggcagat 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 443 gagtgaggaattgaagaaatatgacaaattcacctcacgaggccattccaacaggcagat 502
Query: 305 catgatattctagacaatttacaaagcagagcaagacaatctggaaatagtttggatatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catgatattctagacaatttacaaagcagagcaagacaatctggaaatagtttggatatt 562
Query: 365 tctccatgccgccttgtagagagccggttcttctatagctgccgaccacagagaaa 420
|||||||| | ||||||||||| ||||||| |||| ||||||||||||
Sbjct: 563 tctccatgttgtcttgtagagagtcggttct------gctg---accacagagaaa 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 818
Length adjustment: 9
Effective length of query: 411
Effective length of database: 809
Effective search space: 332499
Effective search space used: 332499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_p02.g1 MSMg01no054_p02.g1 CHROMAT_FILE:
MSMg01no054_p02.g1 PHD_FILE: MSMg01no054_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:15 2005
(488 letters)
>mm_chr10_110372649_110373536
Length = 888
Score = 890 bits (460), Expect = 0.0
Identities = 481/488 (98%)
Strand = Plus / Minus
Query: 1 cttagacctgatcgcagaggaagaccagaccagggcccggctggaaggaacagacagggt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 688 cttagacctgatcgcagaggaagaccagaccagggcccggctggaagggacagacagggt 629
Query: 61 taccactgcacatagggcgtgcacacagagcttgcttattgctgggaaaggtggcaacag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 628 taccactgcacatagggcgtgcacacagagcttgcttattgctgggaaaggtggggacag 569
Query: 121 ggcagaaagagcatccatgatttcccagttctggctacaaacacagcctttgggggtctt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcagaaagagcatccgtgatttcccagttctggctacaaacacagcctttgggggtctt 509
Query: 181 gtgaatttagttttcattgatgggaagatttagaggtaatgtatattgtgaaacatttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtgaatttagttttcattgatgggaagatttagaggtaatgtatattgtgaaacatttgg 449
Query: 241 aatccctttggaatcagggatacacttaaaagagaatataagaagtacagtgcatttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 aatccctttggaatcagggatacacttaaaagagaatataagaagtacagtacatttcaa 389
Query: 301 cagtgtccaccaggggtaggttggctgtttctggaccatacagggagagcctgtttcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagtgtccaccaggggtaggttggctgtttctggaccatacagggagagcctgtttcaaa 329
Query: 361 accagggacgaaagcaggaaggaaatagaggacgttccaagtgaccttcctgagcatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 accagggacgaaagcaggaaggaaatagaggacgttccaagtgaccttcctgagcatgga 269
Query: 421 aacgaacgaagcattaggtgacctgaacggaggacactctggttatcagagtgacacacc 480
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatgaacgcagcattaggtgacctgaacggaggacactctggttatcagagtgacacacc 209
Query: 481 tttggtta 488
||||||||
Sbjct: 208 tttggtta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
