BAC Information

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BAC

Clone NameMSMg01-056A21
Chromosome10 (Build37)
Map Location 128,907,233 - 128,907,874
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787
Downstream geneOlfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056A21.T7 (MSMg01no056_a21.b1)MSMg01-056A21.TJ (MSMg01no056_a21.g1)
ACCAG283558AG283559
length702702
length of high quality
(start - end)		648 (46 - 693)543 (73 - 615)
definitionCHROMAT_FILE: MSMg01no056_a21.b1 PHD_FILE: MSMg01no056_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005CHROMAT_FILE: MSMg01no056_a21.g1 PHD_FILE: MSMg01no056_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAGTTTGCATCTCACCTGTAATATACATCTGTATGAGTAACTG
TTATTATTGCATGCATATATATATATCCATATCAAAGTATCATGTTATAT
ACCTTAAATGTATACAGATGTTGTCACTCATATTTCAATAAGCTGGGTAA
CATAAAATAAAAATTTTATCACATATACACCATCTCACTTTTACATTAAA
TGGTTAGTTGCTTTCACGATGCATAACACTTATTTTATTTTATTATTAAT
GTTATTAAATTATACAGTATTCATGATAGTTATTAAATAATAAATACAAT
ATGTCTTTATTATCTGGTTACACATATTTTATTGTCAAATATCTGGGAAA
AAGTGTATGGAAAAGAATAATTAATATAATTAACCAGAATTTCACATAAA
TAAAATCTTAGTGTTCTTTAATATTTCTTATTAAATTTTAATAGGTTGTT
TAAAACATTATAAAGGCTAATATCTATAAATATGAATATTGAAATTAAAT
ATAATGAGAATTATATTGTAAAATGTGTTTCTGTTTCATTGTGAGTACAA
TGTGCTTTAATTGTTAATATTTTTAAATTGTTAATATTTAACACAGCATT
ATAGCCTTTTGTTTTATGATATCCTGGCACCTAACAAAACTAAGAGTAAA
CN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTTTATACCCCATTTTTTG
ATTGTATTATTTCATTTCTTTGTGGTTATCTTCTCGAGTTCTTTATATAT
TCTAGATATTAGCCCTCTATTGGTTGTAAGGTTAGTGAAGATTATTTTTT
CCAATCTTTAGGTTGCCGATTTGGTTTGTCCTATTGACTATGTCCTTTGC
CTTACAGAAGATTTCCAGTTTCATGAAGTCTTATTTATCAGTTCTTAATC
TTAGAGCCTGAACCACTAGAGTTCTATGAAGGAAATTTCCCCCGGTGCCA
ATGAGTCTGAAGCTCTTTCCCACTTTTTCTTCTGTTAGATTCAGTGTATC
TGGTTTTATATTGAGGTCCTTGATCCACTTGGACTTGAGCTTTGTGCAAG
GTGACAAATATGTATCTATTTTCATTTATCTACATATAGACTACCAGTTA
AACCAGCACTATTTATTGAAGATACTTTCTTTTTTCCATTGTATAATTTT
GGCTTCTCTGTCAAAGATCAAGTGTCTATAAATGTGTGGATTTATTTGTG
GGTCTTCAATTCTATCTATCAACCTATCTATCTTTGTACAAATATCATGC
TGTTTTTATCACTATTAATCTGTAGTATAGTTTGAGCCCAAGGATGGTGA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_a21.b1 MSMg01no056_a21.b1 CHROMAT_FILE:
MSMg01no056_a21.b1 PHD_FILE: MSMg01no056_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:37 2005
         (648 letters)



>mm_chr10_128907029_128908074
          Length = 1046

 Score = 1133 bits (586), Expect = 0.0
 Identities = 629/644 (97%), Gaps = 2/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaagtttgcatctcacctgtaatatacatctgtatgagtaactgttattattg 64
           ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 205 gaattctcaagtttgcatctcacatgtaatatacatctgtatgagtgactgctattattg 264

                                                                       
Query: 65  catgcatatatatatatccatatcaaagtatcatgttatataccttaaatgtatacagat 124
            ||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tatgcacatatatat--ccatatcaaagtatcatgttatataccttaaatgcatacagat 322

                                                                       
Query: 125 gttgtcactcatatttcaataagctgggtaacataaaataaaaattttatcacatataca 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 323 gttgtcactcatatttcaataagctgggtaaaataaaataaaaattttatcacatataca 382

                                                                       
Query: 185 ccatctcacttttacattaaatggttagttgctttcacgatgcataacacttattttatt 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ccatctcacttttacattaaatggttagttgctttcacaatgcataacacttattttatt 442

                                                                       
Query: 245 ttattattaatgttattaaattatacagtattcatgatagttattaaataataaatacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttattattaatgttattaaattatacagtattcatgatagttattaaataataaatacaa 502

                                                                       
Query: 305 tatgtctttattatctggttacacatattttattgtcaaatatctgggaaaaagtgtatg 364
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatatctttattatctggttacacatattttattgtcaaatatctgggaaaaagtgtatg 562

                                                                       
Query: 365 gaaaagaataattaatataattaaccagaatttcacataaataaaatcttagtgttcttt 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaaagaataattaatataattaaccagaatttcacataaataaaatcttagtgttcttt 622

                                                                       
Query: 425 aatatttcttattaaattttaataggttgtttaaaacattataaaggctaatatctataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatatttcttattaaattttaataggttgtttaaaacattataaaggctaatatctataa 682

                                                                       
Query: 485 atatgaatattgaaattaaatataatgagaattatattgtaaaatgtgtttctgtttcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atatgaatattgaaattaaatataatgagaattatattgtaaaatgtgtttctgtttcat 742

                                                                       
Query: 545 tgtgagtacaatgtgctttaattgttaatatttttaaattgttaatatttaacacagcat 604
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 743 tgtgagtacaatgtgctttaattgttaatattttttaatttttaatatttaacacagcat 802

                                                       
Query: 605 tatagccttttgttttatgatatcctggcacctaacaaaactaa 648
           |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 803 tatagccttttgttttatgataccctggcacctaacaaaactaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1046
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1036
Effective search space:   660968
Effective search space used:   660968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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