BAC Information

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BAC

Clone NameMSMg01-056G01
Chromosome10 (Build37)
Map Location 88,443,964 - 88,444,122
singlet/doubletsinglet
Overlap geneTmem16d
Upstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056G01.T7 (MSMg01no056_g01.b1)MSMg01-056G01.TJ (MSMg01no056_g01.g1)
ACCAG283802AG283803
length651739
length of high quality
(start - end)
47 (116 - 162)159 (70 - 228)
definitionCHROMAT_FILE: MSMg01no056_g01.b1 PHD_FILE: MSMg01no056_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:01 2005CHROMAT_FILE: MSMg01no056_g01.g1 PHD_FILE: MSMg01no056_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGGGCGCTATACGACTCCTAATCATAGAAGCGCGGATTCNAATT
TCCTAAAACATATGTTAAAGTTTCTGTAAAAAATTACTTTGAATTAATCC
TTATGTAGATTTTTCTACTATCCATTCTAAAATACATACCTCCTTGAAAC
TGGAAGCCGGATGCAAAGATTTATACCTTATTGTCAAAGTCGAATCTAAA
GAAAGTACAGGACATTCGATTGCATGTTTAATGAAGAAAAACGGTGTGTG
GCTGGTGAATCCAAGCTCATTATTTCACGAGGCACTGTCTCATCAGCGAA
AGCCGCCTTTTCAGCCTTGTTTCATATCCAAAATGACCAACATTTAATTC
CACAGTAAATGAATTAAAAATAGATGAAACTGATGGTGAGGTTGCCCAAT
ACAAATCACATTGTTTCCCTATGACAGCAATTACCGCAAGGCCCTGACTA
CCCTTTATACTATTCATCGACAGCCAGCAGCTCGAGCCTCCTTAGAACAC
ATGGTAGCCCACACTCGCATCCCTATTTGAACCACCCTAACGAACTTCTT
ATCCTTTTTTTCCTCTCTTTTTCTTTCTTTTCCTCCCTCTCTTTCCCCCC
TCCTCCCCTCCATTCTCCTCTTCCTTCCCCTTCCTTTTTTTCCTTATCTT
C
ATGCAGAXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGAGGGGGTGACAC
TATAGAATTTCCCGCGAAATTCCTGAAGCTCAAGTAATGACCATTCTAGA
GGGTTTCCTCGTGCCTTCACACATGACCTTTAATGGCTCCCATCATTTAC
TTTAGAGGCATGCTAAGATGAATGTAGTAGTCACTGAAAGCCTGTACTGC
ACAATGCTAATGCTTGCTTCTGTGTTGAATATTTACAGGACACCCAGGTG
CCTACTTGATATTGATAAACTTGTGCAGGCTATAACAGGTTGGTGCTCTC
CCCTCATCCTCATTATCTTTTTTAACGCGACTTTGTGCACAGTGGAAGCC
AGCCACTCTTGCGCTCCTCGAATGATGTCTCTCTGTGCTTGTTTGGCTCA
CAGTGCCACCCTAGCGGATGCCTTATTGATCTCTGCTTGCTAATGATTTA
TTATAATGTTGCTAAACCATACCTGCCACACTTTTCTGCAATTTGCCTAC
CCTTTGAGTACTGTATCCTTTCCCAACCAATTTCAACCAGTCCCATGACG
CCTCCTCGCCGACTGCTACCACTCACGCATTCCCCCGTCTATAGCAGTCT
TGTCCCTTGTCGTATTCTTTGTTATAGCCACTTAAAAATATTATTAATTT
TGTGCGTTCCCAACCTAAGCATGTCTCCATTTTTATTTAACACGCTCTTC
TTCCCACTCCCCAACCCCAGCGCACCCTTTGCATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_g01.g1 MSMg01no056_g01.g1 CHROMAT_FILE:
MSMg01no056_g01.g1 PHD_FILE: MSMg01no056_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:01 2005
         (159 letters)



>mm_chr10_88443764_88444322
          Length = 559

 Score =  292 bits (151), Expect = 7e-84
 Identities = 157/159 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctgaagctcaagtaatgaccattctagagggtttcctcgtgccttcacacatgacct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 359 ttcctgaagctcaagtaatgaccattctagagggtttcctcgtgccttcagacatgacct 300

                                                                       
Query: 61  ttaatggctcccatcatttactttagaggcatgctaagatgaatgtagtagtcactgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttaatggctcccatcatttactttagaggcatgctaagatgaatgtagtagtcactgaaa 240

                                                  
Query: 121 gcctgtactgcacaatgctaatgcttgcttctgtgttga 159
           ||||| |||||||||||||||||||||||||||||||||
Sbjct: 239 gcctggactgcacaatgctaatgcttgcttctgtgttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)