BAC Information

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BAC

Clone NameMSMg01-056J17
Chromosome10 (Build37)
Map Location 96,726,929 - 96,727,218
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
Downstream geneDcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056J17.T7 (MSMg01no056_j17.b1)MSMg01-056J17.TJ (MSMg01no056_j17.g1)
ACCAG283975AG283976
length713710
length of high quality
(start - end)
290 (69 - 358)603 (71 - 673)
definitionCHROMAT_FILE: MSMg01no056_j17.b1 PHD_FILE: MSMg01no056_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:19 2005CHROMAT_FILE: MSMg01no056_j17.g1 PHD_FILE: MSMg01no056_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTGTCCTTTCTTACTCTAGGATTATGAGTTTCAGTTTTCGAATGAAG
AAATTTTGAGTCTTGTTTGTCCCCAAAGTAACAAACTAGTAAGAGAGGAA
GCAATTTCCCAAACCCTACACCTGAGCACTTGTCAGTTAATGTTAGCATG
ACCATAAGTGCAACTTCTAAAATAAGTTCTTTTTAAACAATAGCAATGCA
CGCACACAAAACAATCAAATCCATGAAATAGTGTAGTGCAGACAAATAGG
GGGGTATTACAGTGTCTGTGTGCAAGCATGCATGGATATGAGATATAAAA
CAACAAAAATCTTTTTTAGCACCCACCCCCCAACCATTTTCATTATTGAC
ATATGCTCTTAAATTCAAATATCGTTTCAAAGATGGTAAGAACAATTTTA
TGTTAAATTTGTGCACAAAAATAAATTAGCCTGGCAGCAAAAGTCAATGT
GCTAGTGGTCTAGAATGTATTAAGATTTAGTAGGCAGAATATTTGAATAT
GTTTTAATAGCTATTACTGTTAAAATATTGAGCTGAAATCAAATGTCAGT
GGACCTCCCCAAACCATTAAGAATTAAGCCTTCATAAAAACTGGTCTTCA
AAATTACCTCTGACAATGCGATATCTACAATTTAAATTCCTGTTTTCAAG
CATGAAATTCTTT
TAGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCATGTCATATTGGGAGCAAGTATATAGA
AGACCATGGTATTGGAGAGAACGGAAGACACATACAGCGGATACTAGTTT
TTCTATACTCAATTGAATTAACTGAAAATTAAACAATTTTGTAGGAAAGT
GGACCTAAACAAAGAAATGCTATAGACACACACAAGGTAAGCTACGTATT
ACAGATTATATATGACAGATTTTAATTCATATGACTGATTGCCTTTGGGA
GTGCATCACAATTGATGTAAGAAGTCTGAAAAATATCATATGCAAATGGT
GAATGGTAACTAAAGACATTTATTTCCCTTACCATGGAAAATGTAAGGAC
TTGTATAGCAAAATGGATAAATAATTTGAAAATTGAAATTAAAAATAGCA
CCAATTATAGCATTTATCCTGTACTGGATAGCCTCTAAAGCCTCTTCTTC
TGTTAGTAGCTTCTCTATGTGCAGGGGCTTGCTTGTGGGGCAGAGATTAT
ATGATATAAAATTCAAAAACTTAATTGATACCCTCTCTCAAAGTGATATC
CCAATCTCTGTCAAGCTGTAACCTGAATATATCCTTTCTCAATTTAAAGG
TGTTTAAAGTAAAGCAAGACTGTTGAACAATCCATTCTGGCAAGACAGTG
AGTGGGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_j17.b1 MSMg01no056_j17.b1 CHROMAT_FILE:
MSMg01no056_j17.b1 PHD_FILE: MSMg01no056_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:19 2005
         (290 letters)



>mm_chr10_96726729_96727418
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggattatgagtttcagttttcgaatgaagaaattttgagtcttgtttgtccccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 ctaggattatgagtttcagttttcgaatgaagaaattttgagtcttgtttgttaccaaag 260

                                                                       
Query: 61  taacaaactagtaagagaggaagcaatttcccaaaccctacacctgagcacttgtcagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacaaactagtaagagaggaagcaatttcccaaaccctacacctgagcacttgtcagtt 320

                                                                       
Query: 121 aatgttagcatgaccataagtgcaacttctaaaataagttctttttaaacaatagcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgttagcatgaccataagtgcaacttctaaaataagttctttttaaacaatagcaatg 380

                                                                       
Query: 181 cacgcacacaaaacaatcaaatccatgaaatagtgtagtgcagacaaataggggggtatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cacgcacacaaaacaatcaaatccatgaaatagtgtagtgcagacaaataggagggtatt 440

                                                             
Query: 241 acagtgtctgtgtgcaagcatgcatggatatgagatataaaacaacaaaa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtgtctgtgtgcaagcatgcatggatatgagatataaaacaacaaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)