BAC Information

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BAC

Clone NameMSMg01-057F06
Chromosome10 (Build37)
Map Location 104,888,455 - 104,888,701
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057F06.T7 (MSMg01no057_f06.b1)MSMg01-057F06.TJ (MSMg01no057_f06.g1)
ACCAG284510AG284511
length790771
length of high quality
(start - end)
252 (98 - 349)41 (75 - 115)
definitionCHROMAT_FILE: MSMg01no057_f06.b1 PHD_FILE: MSMg01no057_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:14 2005CHROMAT_FILE: MSMg01no057_f06.g1 PHD_FILE: MSMg01no057_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTNNTTNTTTTNNNNNTTTTTTTTNNCCCCCCNCCCCCCCAACAAA
CCCAACACTATAATTGCGGCGCTAATACGACTCCTATATTCACAAATCCG
CGGAATTCACTGGCTCTTTCACAAGAGAAAAACTGACTTATGCAGGCATA
CTAGGCTAGTAACTCACACAAAGACTGACACCTCCATATCAGATAATGGA
ACAGCAATTAAAGAATTTTATTTATTTTCCTTTCCCTTAGCCATCCTGTG
ACTGTAGAAACGGAAGGAGGATCAATGGCTGCGTTTAGGGCCAACTTTTT
CATGCACTGTAGAAAAGGTACTAGGCTTGTATTTCAGGAGATTTAGGCGG
GGGGGGGGAGAAAGCTTCTATTACCTTTTCTTTCATTTTGCACATACCCG
TTTTGTTCTTACACCGCATTCTCCTCCAATCCGACTGATTGTTATCTGCC
CCATGACTTACGGCTTCCTTCTTTACCCCCCTTCGTATCCTTTCAGATAT
CTATTATTATAATCTGTCCTTTTACCTTTTTTCAATCTATTCCCTTTCCC
CCTGCTACCTGTCGATTACCTCCTACCCACTATCACACCTTGTCATCCGT
ATCCGCCTACCCACCGGTCTCCCTTACCACACCTCGCTTACTTGCTTACA
TAATTCCTCTGCTGTTTTATTTCCCCTTGCATTTTTCCTTTTTATGCCCC
TTAATCTAATACTCATAAATTTCCCTAAATATAACCCCTTTCCTCAACCC
ATCTAGCACTTATTTCAAACCCCACATCCTTCCCTTTCCC
TTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATATAGGAGACTATGCTTATTATT
TTACATTGTGTGTGTGCGTGTGCGCGTATGTGTGTGCGCGTGCGCACGAC
AACACTTTCTCTCTCCCTCTCCCCCTCTCTCACTCTCCTCACTTCTCTCC
CTCCCATTCTTCCCTCCGCCTATTCATCTTCCCTACTCTCTCTTCACCCT
CACCTATCTATTCTCTCCCTACATCACAATAACTCACACACTATCTTCTC
AATATAAAACCCACACGATACAACACGCACTCCTTACCACTTCGCCCCTT
CTCTCTGATCCATGTCTTCTGATCTCCTCCTCTCCTCCTCCATTTATCAT
ATAACATTTACAACATTAAAACTATCTTCATTATCATCATCCTTTATTAC
CTTGTATTACCGTCGCATTTTTCACCGTCTCTCGACGTCTTGCTTCCTCG
TCTGCCGCTTTCTCTCTTTCATATTCTCTTCATACACATTACTGATCTAT
ACTCTACTCTCATTCTCCATCCTTATTATATATCTTCTAATCTTCCTACG
CATATCTATTCATCATTCCCCTCTTACTCCACTCTTTCTCAACTCATCAT
CAACTCGTTCATATACTTTCAACCTACTAGATTGTACTACTCATTCTCAT
TCATTACTCAGTCATCTACATCGAACAACACTTATTTACTCCCATTCATT
CATACTTACATCCATACTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_f06.b1 MSMg01no057_f06.b1 CHROMAT_FILE:
MSMg01no057_f06.b1 PHD_FILE: MSMg01no057_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:14 2005
         (252 letters)



>mm_chr10_104888251_104888903
          Length = 653

 Score =  416 bits (215), Expect = e-121
 Identities = 239/249 (95%), Gaps = 5/249 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcactggctcttt---cacaagagaaaaactgacttatgcaggcatactaggcta 61
           ||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 ggaattcactggctct--aagcacaagagaaaaactgacttatgcaggcatacaaggcta 262

                                                                       
Query: 62  gtaactcacacaaagactgacacctccatatcagataatggaacagcaattaaagaattt 121
           ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 gtaactcacacaaagtctgatacctccatatcagataatggaacggcaattaaagaattt 322

                                                                       
Query: 122 tatttattttcctttcccttagccatcctgtgactgtagaaacggaaggaggatcaatgg 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 tatttattttcctttcccttagccatcctgtggctgtagaaacggaaggaggatcaatgg 382

                                                                       
Query: 182 ctgcgtttagggccaactttttcatgcactgtagaaaaggtactaggcttgtatttcagg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgcgtttagggccaactttttcatgcactgtagaaaaggtactaggcttgtatttcagg 442

                    
Query: 242 agatttagg 250
           |||||||||
Sbjct: 443 agatttagg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 653
Length adjustment: 9
Effective length of query: 243
Effective length of database: 644
Effective search space:   156492
Effective search space used:   156492
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)