Query= MSMg01no057_f19.b1 MSMg01no057_f19.b1 CHROMAT_FILE:
MSMg01no057_f19.b1 PHD_FILE: MSMg01no057_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:17 2005
(570 letters)
>mm_chr10_116014404_116015373
Length = 970
Score = 1036 bits (536), Expect = 0.0
Identities = 557/564 (98%)
Strand = Plus / Minus
Query: 7 gaattcatcagagttcgactgtaatttcagtggatttgcatatagtgatgggtcagaaga 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaattcatcagagttggactgtaatttcagtggatttgcatatagtgatgggtcagaaga 631
Query: 67 tttactgctatgatagaagtggctcttgtttaggttcaggtgactgtctggaccaaaaat 126
||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 630 tttactgatatggtagaagtggctcttgtttaggttccggtgactgtctggaccaaaaat 571
Query: 127 gatttctgttttgatatttgaaggaatttaatttcattctaacattttcaatatggggaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gatttctgttttgatatttgaaggaatttaatttcattctaacattttcaatatggggaa 511
Query: 187 aagctgtgctcgagttggtatctattgtagaaatttacatttaaggaactataaggaaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aagctgtgctcgagttggtatctattgtagaaatttacatttaaggaactataaggaaaa 451
Query: 247 tttgggtttaaggttctaaaattattttaataccttatcttgtatcagtttattgagctc 306
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 450 tttgggtttaaggttctaaaattattttaataccttatcttgcatcagtttattgagctc 391
Query: 307 tttagtattgctattttttcttatgtctgtagttattctgtgtggtgtccttcaatttct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttagtattgctattttttcttatgtctgtagttattctgtgtggtgtccttcaatttct 331
Query: 367 atttaaaatttttcaactattaggacaaatcatgccaataacagtttactcatcaatatt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atttaaaatttttcaactattaggacaaatcatgccaataacagtttactcatcaatatt 271
Query: 427 atcaaggatgttctagaaatagaatttatttatttattttatggatgtgactacagtgta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atcaaggatgttctagaaatagaatttatttatttattttatggatgtgactacagtgta 211
Query: 487 gccgtacagatggctgtgagctttcatgtggtggttggggattgaatttttagggcctct 546
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gccgtacagatggttgtgaactttcatgtggtggttggggattgaatttttagggcctct 151
Query: 547 gcttgctctggtctgcccccactt 570
||||||||||||||||||||||||
Sbjct: 150 gcttgctctggtctgcccccactt 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f19.g1 MSMg01no057_f19.g1 CHROMAT_FILE:
MSMg01no057_f19.g1 PHD_FILE: MSMg01no057_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:17 2005
(511 letters)
>mm_chr10_115907095_115908005
Length = 911
Score = 913 bits (472), Expect = 0.0
Identities = 505/524 (96%), Gaps = 13/524 (2%)
Strand = Plus / Plus
Query: 1 attttgaagcccggtggttgttcttgcacaacagatgagcacgtttcccaaggcactaat 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 188 attttgaagcccggtggttgttcttgcacaacagatgagcacattttccaaggcactaat 247
Query: 61 cttcatctcttggatacgcattagaaccacctgcacggctttgaaaactacaacactcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttcatctcttggatacgcattagaaccacctgcacggctttgaaaactacaacactcag 307
Query: 121 gccccatccctgaccacatcaatgtgcctgaaaactgaacctaagcccaaaaaggtgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccccatccctgaccacatcaatgtgcctgaaaactgaacctaagcccaaaaaggtgatc 367
Query: 181 ctcaaggtccttgagtaatcccacagcgtagctgaggaccagagcactcggcacccacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctcaaggtccttgagtaatcccacagcgtagctgaggaccagagcactcggcacccacca 427
Query: 241 ctctgagtcacagaggtgatgcaatgctggggcagcagcaagaggacgctaacaccggaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttctgagtcacagaggtgatgcaatgctggggcagcagcaagaggacgctaacaccggaa 487
Query: 301 cgtagactgggctatgggtgatccatcag-------------tccctgcccgacccgaat 347
||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 488 cgtagactgggctatgggtgatccatcagctcctttatcaagtccctgcctgatccgaat 547
Query: 348 actgtgccatgaaacacagtgatcccctgagataacaaggatttgatgaaaaacgtaaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 actgtgccatgaaacacagtgatcccctgagataacaaggatttgatgaaaaacgtaaag 607
Query: 408 aaactgagcagggcataacgatactctaaaggccagcacttgcctcacagtcaacggctc 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaactgagcagagcataacgatactctaaaggccagcacttgcctcacagtcaacggctc 667
Query: 468 aaccagctgtacatttggaccatctgtcccctccctgccttggg 511
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaccagctgtacatttggaccatctgtcccctccctgccttggg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
