BAC Information

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BAC

Clone NameMSMg01-057J19
Chromosome10 (Build37)
Map Location 82,331,216 - 82,331,562
singlet/doubletsinglet
Overlap geneTxnrd1
Upstream gene1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Eid3
Downstream geneEG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057J19.T7 (MSMg01no057_j19.b1)MSMg01-057J19.TJ (MSMg01no057_j19.g1)
ACCAG284726AG284727
length718719
length of high quality
(start - end)
330 (62 - 391)348 (65 - 412)
definitionCHROMAT_FILE: MSMg01no057_j19.b1 PHD_FILE: MSMg01no057_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:37 2005CHROMAT_FILE: MSMg01no057_j19.g1 PHD_FILE: MSMg01no057_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGAGCCGCGGAATTCTGT
TTTGGCTATTCCGAGCTTTTGAGCCAATATCCACTTATCAGTGAGTACAT
ATGTGTTCTTTTGTGATTGAGTTACCTCAGGATGATATTTTCTAAGAACT
TCATGAATTCATCTTTCTAACAGCTGAGTAGTACTCCATTGTGTAAATGT
ACCACATTTTCTGTATCCATTCATCTATTGAGGAAGATCTGGGTTATTTT
CAGCTTCTGGCTATTATAAATAACGCTGCTATGAACATAGTGGAACATGT
GTCCTTATTACTTGTTGGAGCATATTCTGGGTATATGCCCAGGAGTGGTA
GAGCTAGGTCCTCAGGTATAACTATGTCCAGTTTTCTGAGGAACTACCTA
ACTGACTTTCAGAGTGGTCGTACCAGTTTGCAATCCCACCATTAGTGGAG
GAGTGTTCCTCTTTATCCACATCCTTGCCAGCATCTGCTGTCACCTGAGT
TTTTGATCTTAGACATTCTGACTGGTGTGAGGTGCAATCTCACAGTTGTT
TTGATCTTGATTTCCCTGATGATTAAGGATGTTGAACATTTCTTTAGGTG
CTTCTCAGTTCTTTCAGTTTCCTCAGTTGAGAATTCTCTGTTTAGTTCTG
TTCCCTTTTAGGGTTATTGGGCTCTCTGGCAGCCAACTTCTTGAGTACTT
CTGATTTATTGCATATTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCCCACAAAATTCTCACTAGATAGGCCAGATACAGAGCAAAACCCCT
GGGCCTTTTGTCCCTTAAAGCAAGTTTAATTGGGACAATCAGAGTTGTTA
CATGTTGAAACATCACGGAGGGACACTGCTAGTAAAAATCATGATGATAC
TGAGTGGTGAAAGATTAGCCAAAGATAAGGCTTGCAACTGGGAGTGACAA
ATATTGTCTACCTCTGAACACTGGCGAGGTCAGGGAGATTCCCGCCTGCT
TCATAGTCAAGGGTAAATTTTCTGTAAATCTGCCCAGCCTCTTGGGTCAT
GACTCGTCTCACCGCCACAGCTTTGATCTTGTTTTCTTCCCTAGGATGCC
TTCTCCTCCAGCGCGCTGGGAGGTACAGGCTGGTGTACGCAGGCCACTCT
GATTTCCAGGCCAGTCAGGGCTCCCTGACGAGACCCTGTCTCAAAACCAA
GCCAGGACGCCTTCCCTACTGTCTAACTTGGACCTGCCTCTCAAGACTAA
CTGGCTTCCGTCTTACTGTACACTCTACCACTTTTATTACATTCCTTTCT
CAACAACTAAGTTTCTGGATACCGAGATCCACTTTTTGAATGGAATCCCG
CCACCTGAACTTGATAATTTTGAACACTACTGACTTTTCTTGTCTTGTTT
ACACTCCTGACCCTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_j19.g1 MSMg01no057_j19.g1 CHROMAT_FILE:
MSMg01no057_j19.g1 PHD_FILE: MSMg01no057_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:37 2005
         (348 letters)



>mm_chr10_82331016_82331763
          Length = 748

 Score =  601 bits (311), Expect = e-176
 Identities = 338/347 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcactagataggccagatacagagcaaaacccctgggccttttgtcccttaaagcaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 547 tctcactagataggccagatacagagcaaaacccctgggccttttgtttattaaagcaag 488

                                                                       
Query: 61  tttaattgggacaatcagagttgttacatgttgaaacatcacggagggacactgctagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttaattgggacaatcagagttgttacatgttgaaacatcacggagggacactgctagta 428

                                                                       
Query: 121 aaaatcatgatgatactgagtggtgaaagattagccaaagataaggcttgcaactgggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaaatcatgatgatactgagtggtgaaagattagccaaagataaggcttgcaactgggag 368

                                                                       
Query: 181 tgacaaatattgtctacctctgaacactggcgaggtcagggagattcccgcctgcttcat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 367 tgacaaatattgtctacctctgaacactggcgaggtcagggacattcccgcctgcttcat 308

                                                                       
Query: 241 agtcaagggtaaattttctgtaaatctgcccagcctcttgggtcatgactcgtctcaccg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 307 agtcaagggtaaattttctgtaaatctgcccagcctcttgggtcatgactcgtctcagtg 248

                                                          
Query: 301 ccacagctttgatcttgttttcttccctaggatgccttctcctccag 347
            ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 247 gcacagatttgatcttgttttcttccctaggatgccttctcccccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)