BAC Information

Click to search

BAC

Clone NameMSMg01-058D21
Chromosome10 (Build37)
Map Location 103,804,030 - 103,804,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058D21.T7 (MSMg01no058_d21.b1)MSMg01-058D21.TJ (MSMg01no058_d21.g1)
ACCAG285204AG285205
length694696
length of high quality
(start - end)
317 (47 - 363)619 (78 - 696)
definitionCHROMAT_FILE: MSMg01no058_d21.b1 PHD_FILE: MSMg01no058_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:26 2005CHROMAT_FILE: MSMg01no058_d21.g1 PHD_FILE: MSMg01no058_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGAAATGCACTATATTTGTCTCAGCTCTAATTTTATGTTAAGTA
AATTTCTTTCTTTTTTTTAATTCCGTATTTTCTTCATTTACATTTCCAAT
GCTATCCCAAAAGTCCCCCCATACCCTCCCCCCCACTCCCCCCCCCACTT
CTAATTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTTGCA
AGACCAATGGGCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGA
TACATATGCAGCTAGAAACAGGATCTCCTGGGGGTACTAGTTAATTCATA
TTGATGTTCCTTTCTATAGCCCCCCCCACCCCTTTAGCTCCTTGGGTACT
TTCTCTGGCTCCATCATTGGGGACCCTGAAATCCATCCAATAGCTGACTC
TGAGTATCTACTTCTGTTTTTGCTAGGCCCCAGCATAGCCTCACAAGAGA
CAGCTATATCTGAGTCCTTTCATCAAAATCTTGCTAGTGTATGCAATGGT
GTCAGCGTTTGGAGGGTGATTATGGGGTGGATCCCCAGGTATGGCAATCT
CTAGGTGGAACATCCTTTCGTCTCTGCTCACAAACTTTGTCTCTGTAACT
CCTTCCATGGATGTTTTGTTCTCACTTCTAATAATGAGTAAAGT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAAAATAGATTATTTATGG
CTCAGGATTAAGTATTAGATAGGATTCAAAGGTAAATCTGGCTCCTTTGA
TGCCTATCAGATGTTAAATTGTAGAAGAGAACATATTGGAGGGGTTTGTG
TGTTCATATGTGTGTAGAGAACACAGCTCTCTCTACACCCTACCAGCTGC
CACCACAAGCAGTCATTTATTAAGGTGGACGCCAGCTGGGCAGATGCCTA
GCCTAAGCTCAAAAACATGATAAGGCATCTCTAGAATACATTAAAAATAT
GAAGCTAGTTAATTTAGTTTCTTATAAGCACATATTACCATAACTGGCAG
AAAGTAATTTTTTCTGCTCCAATTAAAGTAGCAACTTAAAACTTGGTGAG
GACCGATATATCTCTAGGTATTTTTGGATCAGTATCCACATGTTGAATAT
TATAACCACAGGCATATCACTGAAGCAAAAACAAGCCTGATTGTGGAATG
ATCTTGGCAATCATCAACAACAGAAATTGAGAAAAATGAATCTGAAATGC
ATGTTACAGTGAAGTTTATGGTGGGTGGGTGATTTATTTTATAAAATCAA
AATTTAATTAAAGTTAATATTCTAAAAGCACTTCCAAGTTCAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_d21.g1 MSMg01no058_d21.g1 CHROMAT_FILE:
MSMg01no058_d21.g1 PHD_FILE: MSMg01no058_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:26 2005
         (619 letters)



>mm_chr10_103803894_103804912
          Length = 1019

 Score = 1195 bits (618), Expect = 0.0
 Identities = 618/618 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaaaatagattatttatggctcaggattaagtattagataggattcaaaggtaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 attgcaaaatagattatttatggctcaggattaagtattagataggattcaaaggtaaat 695

                                                                       
Query: 61  ctggctcctttgatgcctatcagatgttaaattgtagaagagaacatattggaggggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctggctcctttgatgcctatcagatgttaaattgtagaagagaacatattggaggggttt 635

                                                                       
Query: 121 gtgtgttcatatgtgtgtagagaacacagctctctctacaccctaccagctgccaccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gtgtgttcatatgtgtgtagagaacacagctctctctacaccctaccagctgccaccaca 575

                                                                       
Query: 181 agcagtcatttattaaggtggacgccagctgggcagatgcctagcctaagctcaaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agcagtcatttattaaggtggacgccagctgggcagatgcctagcctaagctcaaaaaca 515

                                                                       
Query: 241 tgataaggcatctctagaatacattaaaaatatgaagctagttaatttagtttcttataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgataaggcatctctagaatacattaaaaatatgaagctagttaatttagtttcttataa 455

                                                                       
Query: 301 gcacatattaccataactggcagaaagtaattttttctgctccaattaaagtagcaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gcacatattaccataactggcagaaagtaattttttctgctccaattaaagtagcaactt 395

                                                                       
Query: 361 aaaacttggtgaggaccgatatatctctaggtatttttggatcagtatccacatgttgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaaacttggtgaggaccgatatatctctaggtatttttggatcagtatccacatgttgaa 335

                                                                       
Query: 421 tattataaccacaggcatatcactgaagcaaaaacaagcctgattgtggaatgatcttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tattataaccacaggcatatcactgaagcaaaaacaagcctgattgtggaatgatcttgg 275

                                                                       
Query: 481 caatcatcaacaacagaaattgagaaaaatgaatctgaaatgcatgttacagtgaagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caatcatcaacaacagaaattgagaaaaatgaatctgaaatgcatgttacagtgaagttt 215

                                                                       
Query: 541 atggtgggtgggtgatttattttataaaatcaaaatttaattaaagttaatattctaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atggtgggtgggtgatttattttataaaatcaaaatttaattaaagttaatattctaaaa 155

                             
Query: 601 gcacttccaagttcagaa 618
           ||||||||||||||||||
Sbjct: 154 gcacttccaagttcagaa 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)