BAC Information

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BAC

Clone NameMSMg01-058G13
Chromosome10 (Build37)
Map Location 58,370,343 - 58,370,464
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Downstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G13.T7 (MSMg01no058_g13.b1)MSMg01-058G13.TJ (MSMg01no058_g13.g1)
ACCAG285331AG285332
length713712
length of high quality
(start - end)
122 (115 - 236)68 (74 - 141)
definitionCHROMAT_FILE: MSMg01no058_g13.b1 PHD_FILE: MSMg01no058_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:39 2005CHROMAT_FILE: MSMg01no058_g13.g1 PHD_FILE: MSMg01no058_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTGGCGCTAAAGGACTACTATTTTCTTACCCTGCGCGGAANNCNANGGG
TTACATGCATCAGGGCTNCANTCACCTACAGGNCTGCTCTGGGACAACCT
CAAAGCTGGGCCTCCTAAAGACCCAAGAGGAAGGGAAGTTTAGGATACTT
GAATCTTCCCAGTTCAGATTTCTTCTGGGTAGTATGTCTCAGAGACTGTG
GACTGTCATTAGACTGCTGGTAGATCATTGTCTCTGACATATTTACTGCC
CTTGCCCAGGGCCCACTTGTATCTACTTCTTCCCAGTGTACCTCCAGAAG
CTTCTTTTTCATCATTTAGCCCCCGAAGCCCATCACACCTTTTCCTGTGT
ATTCTCATTCACCCACAGCGTCTTAGTTATTTTTCTGTTGCTGTGTTAAG
ACACCATGTGCTACTGACTGGCCTCTAGTCAGCCCCCCTCATTCCATGTT
AGAAATCATGTTTCTGGTTACAGGTGGGCAGGGAGTCATTGTGGAGAGTG
ACCAACCGATTTGTACACAATGAAGTGTGCATCTGATTGTATTTTGTCTC
ATAGCTGCTCCTGTCTTTTAAGTGACTTTTACCCTTTACCTAGTAACGCC
TCCATCACCGCTACTTTATTCCCCCTCGACATTCAAATCATTGCTTATTT
TTGTTTTTCTCTTGCCCCCCCTCCCAATGGTTCCTCTATTCCCACGACCC
TTTTTTTAATGTT
NCTCATGAAGTGAGAGCCTGGCGGACGCCTGGTTCCAAATAGAGGTGAAC
TATAGAAGTTCCCCGAAATTCCCAGTGTGTGTACCACACTTTCGTTGGGT
GAAAGATATTTGCGTTGCTTCTGTTTTCTGGCTGTTGATAACAGAGTGAC
TGAGAACGTGGCTAAGCAGGTATCTGTATGTCAAGTCATTTGGTTATATG
CTGAGGATTGGTAGAGCTGGGTCATATGATAGATTGTAAAATGTGTGCTG
TCTTTCAACGTCTCCTTTTCTTACAGATAGAAACCAGTTCTCTCATCTCT
TTGCCAGCCATCCTTCTATTTTCTAGCCGTATCCCCTTCCAACATTTCTC
CCAACCATTCCTCCCTCAGTCCTCCCACATGTTACTGAAACAGTCCCTTC
TTCCAGTTTTCCAAGTACTAGCAGCTCCAAACTCTAACAACAGCTTTAGC
CTAGCTCTTCAGCTCAGCCTCGTCTGGCTCATCTGTCACCAATTGCCTTC
TCACTTTGCTAGTCTAGCCTACTTTCAACTGTCTCCTGACAATATCTTCC
CAGGCTCATCTCAGTTTCTCCTGCCCAGTGGTCTCCTATTTCCACTCCGT
GCAGTCTCTTGTCTGCCCCAAATGCCTTTTCTCTTCTAGCCCTACTCAAC
CTTTCTTCCCACACCAAATGTTTGTTCTTACCCAACTCTCCAGCTATACT
TTCCTGCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g13.b1 MSMg01no058_g13.b1 CHROMAT_FILE:
MSMg01no058_g13.b1 PHD_FILE: MSMg01no058_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:39 2005
         (122 letters)



>mm_chr10_58370143_58370664
          Length = 522

 Score =  221 bits (114), Expect = 2e-62
 Identities = 120/122 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaagacccaagaggaagggaagtttaggatacttgaatcttcccagttcagatttctt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaagacccaagaggaagggaagcttaggatacttgaatcttcccagttcagatttctt 260

                                                                       
Query: 61  ctgggtagtatgtctcagagactgtggactgtcattagactgctggtagatcattgtctc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctgggtagtatgtctcagagactgtggactgtccttagactgctggtagatcattgtctc 320

             
Query: 121 tg 122
           ||
Sbjct: 321 tg 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)