Query= MSMg01no058_h21.b1 MSMg01no058_h21.b1 CHROMAT_FILE:
MSMg01no058_h21.b1 PHD_FILE: MSMg01no058_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:45 2005
(243 letters)
>mm_chr10_119584239_119584881
Length = 643
Score = 350 bits (181), Expect = e-101
Identities = 234/267 (87%), Gaps = 25/267 (9%)
Strand = Plus / Plus
Query: 1 attaaaaacaatcatgtcacattttagatgggattaagtgttggttcacattatgcctca 60
|||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 201 attaaaaataatcatgtcacattttagatgggattaagtattggtttacattatgcctca 260
Query: 61 aaagtctgtcataggacaacaggagagaagaagcccagagggacatacattccacacagc 120
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcctgtcataggacaacaggagaggagaagcccagagggacatacattccacacagc 320
Query: 121 agaagt------------tctgagaccttcagttcttgcatttgaggccagaacagcaga 168
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagtccttccccaagttctgagaccttcagttcttgcatttgaggccagaacagcaga 380
Query: 169 atccatgacactgttcatggaatataaagtccattggctgtccgggatggctg------- 221
||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 atccatgacactgctcatggaatataaagtccattggctgtctgggatggctgtctggga 440
Query: 222 ------gatacattgtagcaggaatgg 242
|||||| ||||||||||||||
Sbjct: 441 tggctagatacactgtagcaggaatgg 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_h21.g1 MSMg01no058_h21.g1 CHROMAT_FILE:
MSMg01no058_h21.g1 PHD_FILE: MSMg01no058_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:45 2005
(620 letters)
>mm_chr10_119677680_119678705
Length = 1026
Score = 1168 bits (604), Expect = 0.0
Identities = 618/626 (98%), Gaps = 6/626 (0%)
Strand = Plus / Minus
Query: 1 cctatggcatggagagtcgggggatactcactccatcctgtcaagaatgcaagatacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 cctatggcatggagagtcgggggatactcactccatcctgtcaagaatgcaagatacaaa 767
Query: 61 catacaaagtcttaagacaattataacaacatagaaacattggcataactggtgagtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 catacaaagtcttaagacaattataacaacatagaaacattggcataactggtgagtggc 707
Query: 121 tggggttacaaacgtttgtatttcattttagatttctctgaatttttgagtgttctacaa 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggagttacaaacgtttgtatttcattttagatttctctgaatttttgagtgttctacaa 647
Query: 181 tatacatgtgtgatgtttatgagaaaatatactagaagttataaaagaaaacacctgaaa 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 646 tatacatgtgtgatgtttatgagaaaatataccagaagttataaaagaaaacacctgaaa 587
Query: 241 agcaaaaaaagataaattataagtaaagaaaaaaatttagcctttgatctggaggaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agcaaaaaaagataaattataagtaaagaaaaaaatttagcctttgatctggaggaacaa 527
Query: 301 gg------agagtcagagatggcttcttaccattgcttagcttattttaattttattcaa 354
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggagagtcagagtcagagatggcttcttaccattgcttagcttattttaattttattcaa 467
Query: 355 atcaaaggaaattgtgctgtctgcgaggcaaagaggtcctatcacctccgggaaagggtt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atcaaaggaaattgtgctgtctgcgaggcaaagaggtcctatcacctccgggaaagggtt 407
Query: 415 cactgttaattgcaagagaaacagacctgcaaggaagaggaggttcaccgagcggctgct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cactgttaattgcaagagaaacagacctgcaaggaagaggaggttcaccgagcggctgct 347
Query: 475 ctttttatggaaaagaatataacttattttgacactagtcaccatgttcttgctggtacg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctttttatggaaaagaatataacttattttgacactagtcaccatgttcttgctggtacg 287
Query: 535 atattgtcatggatttatggcttagaaaatgattggcctgaaactatagagatcagggtc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atattgtcatggatttatggcttagaaaatgattggcctgaaactatagagatcagggtc 227
Query: 595 cctgggcttttcctaggaactcctaa 620
||||||||||||||||||||||||||
Sbjct: 226 cctgggcttttcctaggaactcctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1026
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1016
Effective search space: 619760
Effective search space used: 619760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
