BAC Information

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BAC

Clone NameMSMg01-058I10
Chromosome10 (Build37)
Map Location 100,649,215 - 100,649,569
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058I10.T7 (MSMg01no058_i10.b1)MSMg01-058I10.TJ (MSMg01no058_i10.g1)
ACCAG285421AG285422
length702717
length of high quality
(start - end)
355 (71 - 425)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no058_i10.b1 PHD_FILE: MSMg01no058_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:47 2005CHROMAT_FILE: MSMg01no058_i10.g1 PHD_FILE: MSMg01no058_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATTTCCTATTTATTGGATTCATTTTGTTTCTAGTTTGTAAT
TTTATTTTATGGTGCCTACTCATAATCTTGTTTTATGACTTTTCTAGAGT
TTTTAACACTAAAAAGTTATATTATTCTCAAATGAATTGAGATTTGCACA
TCACAATTTTAACCTGGTTTTCATTGAATGTATTAAATAGTAAGGAAGAT
AATAAGATTCAGGATTTTATATATAATGACATAATTATTTCCTGCCCCTT
CCATCAATCTATATTAATTTGACAATATCAGTACTACTGTGATTGATGTG
TGATTATAATCTTTTCGTATAACTTGGCTTTAATAAATTAGGAAAACTTC
ATTTTGTAATGCCAAGATATTTTGCACATGATTATGTTAACAGAATTCTG
ATATTTTACATTAACATTAACAAATATGTTCGTCTAAAGAAATGCTACCC
ATTGGCACATCATTTTATATCCATGTAACTCTTCATTGCAGGTAAATGGA
TGGAATTAGAAAAGATCATATTGAGTGAGGTAACCCAGGACCATAAACAC
AAATATCATATGTTCACCCCTGGTTTCCTAATTCCTACTCTTTCAATATG
AATGCATAACCTGCAGTTTGCATTGATTTTATGTATATGTTAACCGATCT
TT
CAATGACAGTGGGTAGGCCTGGAGGCCGCTTTTCAAAAAAGATTTATGTG
ACACTATAGTTTTCTCAGAGAAATTCCTCCTCTTATGCTTTCATTATTAC
TTCTATTTTTATTGTCAGCTGCTCAACAATTTCATTTGTTTCCCTCAAAT
ATTTGTTTGTGTTTCCCTGGATATCTTTAAGGGCTTTATTCCTTTTCTCT
TTAAAGACTTTTGTCATCTTCATATGGTTGGTTTTAAAGACTTCTTCTTG
TGCTTCTGGCATGTTGAAATATTAAACACCTTCTGTTGCATGACAGCTGG
GTTCCATTGTATGGCTATTTATCTAATTGTTATTGATTTTGACCTTTTGC
TCAAATCTAGAAATCTCGCCTCGCGGTGATTAAATTTCTAGGTGCTGTAT
CTGAATTTGTCTTTGTTGAGAGGAAATTGTTCATCAATTTCAGTTCCTTT
CAGGATTTTCAGAGAATATGACATCTCTGTGTTGACTGATTTGATAACCT
GGTTGGTTGGCATGTTCCTAGTCTTCACAGGTAATGCCTGCGTATGTTGC
AGTCTGACACATTGCAATCAACTGTGGATAGTGCCCCTCAAGCCCTTTAA
AATAAGTTTCTGTGAAATTCATTAGCCAGTATGGCACCATAAAAAATCTG
AAACTGCATCCTGTGTGATTATCTTGTAACCACTAGAAAAAAATTCTTTG
AAAAAATTTCCTCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_i10.b1 MSMg01no058_i10.b1 CHROMAT_FILE:
MSMg01no058_i10.b1 PHD_FILE: MSMg01no058_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:47 2005
         (355 letters)



>mm_chr10_100649015_100649769
          Length = 755

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggattcattttgtttctagtttgtaattttattttatggtgcctactcataatcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggattcattttgtttctagtttgtaattttattttatggtgcctactcataatcttg 260

                                                                       
Query: 61  ttttatgacttttctagagtttttaacactaaaaagttatattattctcaaatgaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatgacttttctagagtttttaacactaaaaagttatattattctcaaatgaattga 320

                                                                       
Query: 121 gatttgcacatcacaattttaacctggttttcattgaatgtattaaatagtaaggaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttgcacatcacaattttaacctggttttcattgaatgtattaaatagtaaggaagat 380

                                                                       
Query: 181 aataagattcaggattttatatataatgacataattatttcctgccccttccatcaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataagattcaggattttatatataatgacataattatttcctgccccttccatcaatct 440

                                                                       
Query: 241 atattaatttgacaatatcagtactactgtgattgatgtgtgattataatcttttcgtat 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattaacatgacaatatcagtactactgtgattgatgtgtgattataatcttttcgtat 500

                                                                  
Query: 301 aacttggctttaataaattaggaaaacttcattttgtaatgccaagatattttgc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttggctttaataaattaggaaaacttcattttgtaatgccaagatattttgc 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)