BAC Information

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BAC

Clone NameMSMg01-059N20
Chromosome10 (Build37)
Map Location 110,723,178 - 110,723,672
singlet/doubletsinglet
Overlap geneOsbpl8
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059N20.T7 (MSMg01no059_n20.b1)MSMg01-059N20.TJ (MSMg01no059_n20.g1)
ACCAG286443AG286444
length687693
length of high quality
(start - end)
495 (74 - 568)448 (76 - 523)
definitionCHROMAT_FILE: MSMg01no059_n20.b1 PHD_FILE: MSMg01no059_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:28 2005CHROMAT_FILE: MSMg01no059_n20.g1 PHD_FILE: MSMg01no059_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAATCTATAATTGCGGCGCTATACGACTCCTATAGGCAGAGAAGCGCGG
AATTCCTTTAAATATACCCAAGTGAAGTTTTCATTAATGACAAAAAGACT
GATAACTCAGAGATTTTCTGGAATCCAACTCCTGACATTAAACAGTGGAG
ATTAATAAGGCACACTGTAAAGTTTGAAGAACAGGATGATTTCGAATCAG
AGAAGTAAGTACACCATTTTTAGCTAACTTCATGAAAATTAAGGAGTATT
TTGAGTTGCAGAACAGTGTAGTCACACTATATTCTGTCTTCTGTACTGTT
AACTCTGCAAGAGAGTTTGTCATTTGTGGGGTTGGAAGCATTCTGGGTTG
GTGTATGTGACACACGAAACTTCACAGATCACCTTGTCTCTCTGTAGCAC
AGAGCTAAAATGTCCTCCTTTTTCTCTTCTACTCCAGTGCTTTAATTTTT
GTTTGCATACAATTACAGGAGCTCTCAGTGGCTCTCAGCCTCCGCCTGGC
TTGTGCTTTCTAATCTGGCTTAGGCTGGAAAGTGAAGGAAGGGAAGAGCA
CAAAGCCTACATTTTCTGTCCTCTGAAACTAGTACTGCCACTTGATGCCC
TGGCCTCTAAAGGATCTACATTACTTGGCCCTACCATAGATTATGCTTTT
AAGCCAGGGAATTCTTTTCTAGAATTCTCAGCCCTGT
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGCCTAAATGAACTGTCTCTCTC
AAATCAAAACACAGAAACCATCATCTCCATTGTTGTAGCCTGAATGTGAA
ATGTCCCCTATGGTTCCCGTGTTTGCAAACTTGATCGATCCCCAGCTGGT
AGTGATGTTTGGGAGGGAATGAACCTTTAAGAAGTGGGTCACTGGGGGAA
ATGGATCACTGAAGGAAGTGGGTCACTGGGGGAAGGTCTTAAGGCTTTAT
AGCCTGGTGCCACTTCCTGTTCACTTTCTTCTTCCTTAGTATGTGGCCAC
ATATGCCTTCTTACCTGCTACCGTGTCTTCCCTCACAGGATGGACTGTAT
CCCCTTGAAACTCTAAGCCAAAATAAGTCCTTTCTGGAGGATATGCAGGT
TGTGTGCATTAGGTACCTGTCTGGTTGCTGTGATACAATACTCTAACCGA
AGTTTCACAGTTCATGGAGAAGATATGGCACATGGTGGCAGGAGCTTGTT
GTGGCAAGTCACATCTGTGGTGAGGAAATAAAGAGTAATGAACGATGGTA
CTCAGTTTCTTTCCTCTGTTAGTCCGGTCTGCCCTTTAGGGTGCGTTTTT
GCGTCTTATCCTACCTGATTTTATAATCCTTCACAGATCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_n20.b1 MSMg01no059_n20.b1 CHROMAT_FILE:
MSMg01no059_n20.b1 PHD_FILE: MSMg01no059_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:28 2005
         (495 letters)



>mm_chr10_110722978_110723872
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagttttcattaatgacaaaaagactgataactcagagattttctggaatccaactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagttttcattaatgacaaaaagactgataactcagagattttctggaatccaactcct 260

                                                                       
Query: 61  gacattaaacagtggagattaataaggcacactgtaaagtttgaagaacaggatgatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacattaaacagtggagattaataaggcacactgtaaagtttgaagaacaggatgatttc 320

                                                                       
Query: 121 gaatcagagaagtaagtacaccatttttagctaacttcatgaaaattaaggagtattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcagagaagtaagtacaccatttttagctaacttcatgaaaattaaggagtattttg 380

                                                                       
Query: 181 agttgcagaacagtgtagtcacactatattctgtcttctgtactgttaactctgcaagag 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgcaaaacagtgtagtcacactatattctgtcttctgtactgttaactctgcaagag 440

                                                                       
Query: 241 agtttgtcatttgtggggttggaagcattctgggttggtgtatgtgacacacgaaacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtttgtcatttgtggggttggaagcattctgggttggtgtatgtgacacacgaaacttc 500

                                                                       
Query: 301 acagatcaccttgtctctctgtagcacagagctaaaatgtcctcctttttctcttctact 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagatcaccttatctctctgtagcacagagctaaaatgtcctcctttttctcttctact 560

                                                                       
Query: 361 ccagtgctttaatttttgtttgcatacaattacaggagctctcagtggctctcagcctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagtgctttaatttttgtttgcatacaattacaggagctctcagtggctctcagcctcc 620

                                                                       
Query: 421 gcctggcttgtgctttctaatctggcttaggctggaaagtgaaggaagggaagagcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gcctggcttgtgctttctaatctggcttaggctggaaagtgaaggaagggaagagtacaa 680

                          
Query: 481 agcctacattttctg 495
           |||||||||||||||
Sbjct: 681 agcctacattttctg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)