BAC Information

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BAC

Clone NameMSMg01-059O12
Chromosome10 (Build37)
Map Location 101,828,638 - 101,829,286
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059O12.T7 (MSMg01no059_o12.b1)MSMg01-059O12.TJ (MSMg01no059_o12.g1)
ACCAG286475AG286476
length731735
length of high quality
(start - end)
655 (44 - 698)564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no059_o12.b1 PHD_FILE: MSMg01no059_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:31 2005CHROMAT_FILE: MSMg01no059_o12.g1 PHD_FILE: MSMg01no059_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGAAGGCGCGGAATT
CAATAAATCTATCTTTTTTTTCCCCTGAAATAGGTCTTGAGAGTCTTATT
ATCCAAACAGTAAAGAGAACAATATAAATATAGTAGTAATAATGTAGCAC
CATATTGATTTGTTAAGGGCTAAACACAGAGCATAGGGCATCCTTTCAAG
ATGGTTGCTATGGCCACCAAAATTGTTGCTTTAGTGACCACCTCAGGTCA
GAATAGATTTCATGGTTATAATGACCCTTGGAACAAAGGCTTGTGTTAAG
AAAGTTTCACATGTCTACCGTGACTTGCCTTCTAATCAGTACTTTTTTTG
TTTAATTTTAATGATAAAAAGTAGAAATCAGTAGGGAAAGGTCACTTTGA
AAGGGAATCTGGGAAACCAAATGTAGCATTCTTTATTAAGTTAACTTCAA
TACTGAAGAAGATTGCCTTGTCTTTCCAAGCCTGCTCACACATTTGTGTG
TGTTTGTGCTGTTTTTATAGTACCCGACAAGGAAACCCCAATCCTGTCAA
TGCTACTAGTTTGGTCTACATTGTAACTTAACGTGAGCCACACACAAAAT
AATAATAATAATAAATAAGTCTTGCTAGGCACTGCTATGAACCCAAAGAA
ATGGACTAGCTGTTGTGATTTTTCACTTCGCTGCTACCTATAGCTAGGAC
TGGCAAGACTTGTGACAATGAAAATACTCCA
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGATCAGTGAGTTGACAGATTTCTATT
GAACGCAATGGGATATTGTATATCTTTAGTCTTAGACAATGTAGGTAAGG
CTAGATTGTAGAAGGAAGCAGCCATGTTTAAAGTGAGGGGCAGACAAAGT
GATGAATCAGAGAAAAATTTGACAGAATGAATCAGAGAGCAGATACTCCC
AACTCACACAAGAACAATGGAAAAAGAGCTTTCTCTTAGGAAAGAGAAAA
GGAGAGAAGGTAGTTTTACTAGGATAGTTTTACAGAACATGTGAAAAGAG
AAGGAGCCAGAGAATGAGAAGGAGCTAGAAGATTAAAACACATTGCAAAG
TTAATTTGAGGCCAAGCACAACAATTCAGACAAGTGCCACCTGAGAGGAT
CCATCTTAAATCAGTCAGCATGAAGAGGAGTTTGAGCCAGAGCACCTGAG
TTGAACCAGCCAACCAGAGTTCAGAAAGAGCAAGAAAGGGTGAGTTTATT
CAGCAGTAGGCCTCTGAGATGACAATTACATCTGGCAAATAAAAGTTACT
CTTATATGTAAACATTAGCGTCTAAAATAGTGGTCACAGATGTGAAAACA
ATATTACTGCAAGGAATGAAGAGACTTAATGTTTAGTCTTAATGGTAGTT
ACGAGAAAATATTGCTTTTTTCAAATTTGGTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_o12.b1 MSMg01no059_o12.b1 CHROMAT_FILE:
MSMg01no059_o12.b1 PHD_FILE: MSMg01no059_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:31 2005
         (655 letters)



>mm_chr10_101828436_101829489
          Length = 1054

 Score = 1185 bits (613), Expect = 0.0
 Identities = 642/653 (98%), Gaps = 4/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaataaatctatcttttttttcccctgaaataggtcttgagagtcttattatcca 62
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaataaatctatcttttttt-cccctgaaataggtcttgagagtcttattatcca 261

                                                                       
Query: 63  aacagtaaagagaacaatataaatatagtagtaataatgtagcaccatattgatttgtta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacagtaaagagaacaatataaatatagtagtaataatgtagcaccatattgatttgtta 321

                                                                       
Query: 123 agggctaaacacagagcatagggcatcctttcaagatggttgctatggccaccaaaattg 182
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agggcttaacacagagcatagggcatcctttcaagatggttgctatggccaccaaaattg 381

                                                                       
Query: 183 ttgctttagtgaccacctcaggtcagaatagatttcatggttataatgacccttggaaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgctttagtgaccacctcaggtcagaatagatttcatggttataatgacccttggaaca 441

                                                                       
Query: 243 aaggcttgtgttaagaaagtttcacatgtctaccgtgacttgccttctaatcagtacttt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaggcttgtgttaagaaagtttcacatgtctaccgtgacttgccttctaatcagtacttt 501

                                                                       
Query: 303 ttttgtttaattttaatgataaaaagtagaaatcagtagggaaaggtcactttgaaaggg 362
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 502 ttttgtttaattttaatgataaaaagtagaaatcagtaggaaaaggtcactttgaaaggg 561

                                                                       
Query: 363 aatctgggaaaccaaatgtagcattctttattaagttaacttcaatactgaagaagattg 422
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatctgggaaagtaaatgtagcattctttattaagttaacttcaatactgaagaagattg 621

                                                                       
Query: 423 ccttgtctttccaagcctgctcacacatttgtgtgtgtttgtgctgtttttatagtaccc 482
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 ccttgtctttccaagcctgctcacacatttgtgtgtgttcgtgctgtttttatagtaccc 681

                                                                       
Query: 483 gacaaggaaaccccaatcctgtcaatgctactagtttggtctacattgtaacttaacgtg 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 682 gacaaggaaaccccaatcctgtcaatgctactagtttggtctacattgtaacttaatgtg 741

                                                                       
Query: 543 agccacacacaaaataataataataataaataagtcttgctaggcactgctatgaaccca 602
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 742 agccacacacaaaataataataataa---ataagtcttgctaggcactgctatgaaccca 798

                                                                
Query: 603 aagaaatggactagctgttgtgatttttcacttcgctgctacctatagctagg 655
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 799 aagaaatggactagctgctgtgatttttcacttcgctgctacctatagctagg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space:   673380
Effective search space used:   673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)