BAC Information

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BAC

Clone NameMSMg01-060C15
Chromosome10 (Build37)
Map Location 48,358,137 - 48,358,670
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060C15.T7 (MSMg01no060_c15.b1)MSMg01-060C15.TJ (MSMg01no060_c15.g1)
ACCAG286672AG286673
length711704
length of high quality
(start - end)
532 (41 - 572)588 (74 - 661)
definitionCHROMAT_FILE: MSMg01no060_c15.b1 PHD_FILE: MSMg01no060_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:50 2005CHROMAT_FILE: MSMg01no060_c15.g1 PHD_FILE: MSMg01no060_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAAAGAGGATCCGCGGAA
TTCCTGATCTTCTCAAAACTTTTATCATGAATAGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTTTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGAGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTCCCACCCCTATTTTGTGAAATAGTTTGTGCAGAATTGGAAT
TAGATCCTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTA
CGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGA
TACCTGGTATCTGCCCAGAAATTTTGTCCATTTCCTCCAGTTTTTCCAGT
TTTTTGTGATAAACCCCTTTTGCATGATAGACTCTGCCGTTGTATTCATA
ATTATCCTGTT
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATTTGGGCCGGTCACTGAACCTCCC
CTCCCTCAATCTCTTCTCCTTTTCTGTCTTTGCAGTTATTATAGAAAGGG
ACAATTCTGGGTCAGAGCTATTGATTGTGGGAGGGCAACCCCGTCCCTCC
ACTTGATGCCACGTCCTTCCACCGGAGATGAACTCCACATTTTCCCAATT
CCCACTGTTGGTCATTTCATCTAAGTTCTGTCCCTTTGAATCCTGAGTGA
CTGTTACCCGCACCACCCCATGTCTCTCATACATTCGAAAGGGTCCCCTC
GACCTCCTACCTCCCAAGGTTGTCTGTTTCCATTCTTTCTGCTGGCCCTC
AGGGCTCCCCCACTGTTTTTCACTCCACCAATAACTGATCAGTTTTAAAG
TAGCATCCTAAGTCATTGGATGGTTATAGAGGATGGATACACAAAATGAA
TGAGGCTGAAGGACACCTTGTATATGCTAAGTTGATACTTAAATTAATTT
AGCTCAATCTGGACCTGGTGGCACACACATTTAATCCCAGCACTCAGGAG
GCAGAGGCAGGCAGATTTCTGAGTTCAAGGTCAGTCTGGTCTATAAAGTG
AGTTCCAGGACAGCCAGGGCTATACAGAGAAGCCCTGTCTCAAAAACAAA
ACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_c15.g1 MSMg01no060_c15.g1 CHROMAT_FILE:
MSMg01no060_c15.g1 PHD_FILE: MSMg01no060_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:50 2005
         (588 letters)



>mm_chr10_48357683_48358670
          Length = 988

 Score =  934 bits (483), Expect = 0.0
 Identities = 523/539 (97%), Gaps = 5/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 50  tctgtctttgcagttattatagaaagggacaattctgggtcagagctattgattgtggga 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tctgtctttgcagttattatagaaagggacaattctgggtcagagctattgattgtggga 929

                                                                       
Query: 110 gggcaaccccgtccctccacttgatgccacgtccttccaccggagatgaactccacattt 169
           ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 928 gggcaaccctgtccctccacttgatgccacgtcctttcaccagagatgaactccacattt 869

                                                                       
Query: 170 tcccaattcccactgttggtcatttcatctaagttctgtccctttgaatcctgagtgact 229
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tcccaattccctctgttggtcatttcatctaagttctgtccctttgaatcctgagtgact 809

                                                                       
Query: 230 gttacccgcaccaccccatgtctctcatacattcgaaagggtcccctcgacctcctacct 289
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 808 gttatccgcaccaccccatgtctctcatacattcgaaagggtccccccgacctcctacct 749

                                                                       
Query: 290 cccaaggttgtctgtttccattctttctgctggccctcagggctcccccactgtttttca 349
           |||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||
Sbjct: 748 cccaaggttgtctgtttccattctttctgctggccctcagggcttcattactgtttttca 689

                                                                       
Query: 350 ctccaccaataactgatcagttttaaagtagcatcctaagtcattggatggttatagagg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ctccaccaataactgatcagttttaaagtagcatcctaagtcattggatggttatagagg 629

                                                                       
Query: 410 atggatacacaaaatgaatgaggctgaaggacaccttgtatatgctaagttgatacttaa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 628 atggatacacaaaatgaatgaggctgaaggacaccttgtatatgctaagttgatac---- 573

                                                                       
Query: 470 attaatttagctcaatctggacctggtggcacacacatttaatcccagcactcaggaggc 529
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 572 -ttaatttagctcaatctggacctggtggcacacacatttaattccagcactcaggaggc 514

                                                                      
Query: 530 agaggcaggcagatttctgagttcaaggtcagtctggtctataaagtgagttccaggac 588
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agaggcaggcagatttctgagttcaaggtcagtctggtctataaagtgagttccaggac 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)