BAC Information

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BAC

Clone NameMSMg01-060H23
Chromosome10 (Build37)
Map Location 119,606,851 - 119,749,861
singlet/doubletdoublet
Overlap geneIrak3, Tmbim4, 1190005P17Rik
Upstream geneCand1, Grip1, Helb
Downstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H23.T7 (MSMg01no060_h23.b1)MSMg01-060H23.TJ (MSMg01no060_h23.g1)
ACCAG286927AG286928
length707703
length of high quality
(start - end)
416 (40 - 455)246 (90 - 335)
definitionCHROMAT_FILE: MSMg01no060_h23.b1 PHD_FILE: MSMg01no060_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:14 2005CHROMAT_FILE: MSMg01no060_h23.g1 PHD_FILE: MSMg01no060_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,606,851 - 119,607,261)(119,749,616 - 119,749,861)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAAGCGCGGAATTCCT
TTGTGAAGCGCGATGAACTTCACAGGGTTAGAGTCCCTCCTTGAGGGAGG
CTGCACAGCTGTACTTAAGAATTTATATAAAACTGAAGCCATCTAAATTT
GTCTCCCAGGACTCCCAGACCATGAATGAATTCCCAGGAAAATCATATGC
ACATCAAAAGCCTTTGATTTCTTTGTCTAAAACTTTCTGAAGAGAACCAC
TCCGATGAAACCGCTGTCTCAACTGAGACTTCTCTGAGGGAGGGGAAGTG
TTGTGATGCTAAGAATTACCATTCGGCCATGTTAGTCACACAGGATTTCA
CCTAACTTCTTGTGACATTTTCTTGTTTCAATATGTCCAAGTATATCACG
GATTCTGTCCCACCCCAAAATACATTTTACAATACACTTTAAGGAGAACA
CCAGAGCAGATGTCAAAACTGGATTTAATGTTCTAACATCCAACCCACGA
TAATTAAATGCTAGGCATGCCAATTCCTGTGGTCTAATACCCCAAGATGA
ACCAAGTACACTCACAGGAGGAGAACTTCCAGGTCTGATAAAGATCGCTT
CCAGTGGTTCGTGAGGTGGATTTTTTTCTCCTAAGTGGCGCAGAGTGAAT
AAGAAGGAGACAGCGGAGCAGATGTGTCTCTACTTCTGCGAATCAAAGGC
TAGGGCG
NCATTCCTTCTTACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCAGTCCAT
TGTTCCTGTCCTACAGATTTTAGTTGTGTTTTCCAAGTGACATATTTAAG
TGCACCTCTGTCATGGTCACTCAACCAACGTTGCTTGCTTGGTTAATTTC
TATAGATTCCAGCCTTGTAGACTTTTGAATTCTCATGCTCCGACTGCTGA
GTAATTCTTAAAATCTCATTACTCGAGTGTCCCATTTAATCTCAAATCAA
ATCTAGCAGGGGCGTGAGTGGACTCGACAGAAATAAATTATCATCGCAAA
TAACCATTGACATAGCACCGTGAACTTGTATATCACACAATACGGTATTG
TGAATAATACCCTCTCCAGAAGGCCCTCTCTGATACCTACAGCAAAGGGA
AACATATGATAACAATAAATATGGCTTCCACGCTACCACAGTCCTTTCAC
CACTCCCTTCCCGTGGGGACCAGAAGCCATACCTCTGCTCTGCGTTTTTC
TCTTCGTTTAAAAAAAGACTACAAGACTACCCAGATTCAATGAACAATTC
CTCTCTGTGCTATAATAAATTTCATCCGCACAGGCAATTTCTTTTGCGAC
TCACGTGCCCACTGCCTTCCACGTAATTTTCTTTCACGTTCATCTAAATT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h23.b1 MSMg01no060_h23.b1 CHROMAT_FILE:
MSMg01no060_h23.b1 PHD_FILE: MSMg01no060_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:14 2005
         (416 letters)



>mm_chr10_119606648_119607463
          Length = 816

 Score =  725 bits (375), Expect = 0.0
 Identities = 402/411 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctttgtgaagcgcgatgaacttcacagggttagagtccctccttgagggaggct 63
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 gaattcctttgtgaagggcgatgaacttcacagggttagagtccctccgtgagggaggct 263

                                                                       
Query: 64  gcacagctgtacttaagaatttatataaaactgaagccatctaaatttgtctcccaggac 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcacagctgtacttatgaatttatataaaactgaagccatctaaatttgtctcccaggac 323

                                                                       
Query: 124 tcccagaccatgaatgaattcccaggaaaatcatatgcacatcaaaagcctttgatttct 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 tcccagaccatgaatgaattcccaggaaaatcatatgcacatcaaaagccttggatttct 383

                                                                       
Query: 184 ttgtctaaaactttctgaagagaaccactccgatgaaaccgctgtctcaactgagacttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtctaaaactttctgaagagaaccactccgatgaaaccgctgtctcaactgagacttc 443

                                                                       
Query: 244 tctgagggaggggaagtgttgtgatgctaagaattaccattcggccatgttagtcacaca 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctgagggaggggaagtgttctgatgctaagaattaccattcggccatgttagtcacaca 503

                                                                       
Query: 304 ggatttcacctaacttcttgtgacattttcttgtttcaatatgtccaagtatatcacgga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggatttcacctaacttcttgtgacattttcttgtttcaatatgtccaagtatatcacgga 563

                                                              
Query: 364 ttctgtcccaccccaaaatacattttacaatacactttaaggagaacacca 414
           |||||| ||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct: 564 ttctgttccatcccaaaatacattttaaaatgcactttaaggagaacacca 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_h23.g1 MSMg01no060_h23.g1 CHROMAT_FILE:
MSMg01no060_h23.g1 PHD_FILE: MSMg01no060_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:14 2005
         (246 letters)



>mm_chr10_119749416_119750061
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagtccattgttcctgtcctacagattttagttgtgttttccaagtgacatatttaa 60
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcagtccatttttcctatcctacagattttagttgtgttttccaagtgacatatttaa 387

                                                                       
Query: 61  gtgcacctctgtcatggtcactcaaccaacgttgcttgcttggttaatttctatagattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgcacctctgtcatggtcactcaaccaacgttgcttgcttggttaatttctatagattc 327

                                                                       
Query: 121 cagccttgtagacttttgaattctcatgctccgactgctgagtaattcttaaaatctcat 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 cagccttgtagacttttgaattctcatgctccgattgctgagtaattcttaaaatctcat 267

                                                                       
Query: 181 tactcgagtgtcccatttaatctcaaatcaaatctagcaggggcgtgagtggactcgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tactcgagtgtcccatttaatctcaaatcaaatctagcaggggcgtgagtggactcgaca 207

                 
Query: 241 gaaata 246
           ||||||
Sbjct: 206 gaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)