BAC Information

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BAC

Clone NameMSMg01-060L18
Chromosome10 (Build37)
Map Location 57,165,746 - 57,166,224
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L18.T7 (MSMg01no060_l18.b1)MSMg01-060L18.TJ (MSMg01no060_l18.g1)
ACCAG287109AG287110
length705686
length of high quality
(start - end)
592 (60 - 651)564 (68 - 631)
definitionCHROMAT_FILE: MSMg01no060_l18.b1 PHD_FILE: MSMg01no060_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:32 2005CHROMAT_FILE: MSMg01no060_l18.g1 PHD_FILE: MSMg01no060_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGTTCNNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTTCCCTGCTCATTTAGCCTTGCCTGATCCA
TCACTTTCTGAAGGGTTTTGGCATTTCTAGAAAGGAGTTTAGATTGTTTG
TGATGCCCAGTCAGGAGATAAAATGGAGACGTGGGGAGGATAGATGGTCA
GCTAATTTCATTCTGTGAGTCAGAAATCATGGGCCAGATTAGGAGCAAAG
ATCAGGTGTGTAGGGAAATGAAGACAGAGAAGGAAGCATGAGGAAAGAAG
AGAGACCAGGGTTTTGGGGATTAGAAACCAGGAGATTGGGGGCTGGAGAG
ATGGCTCAGTGGGTAAGAGCACTGGTTACTCCCTGAGGTCCTGAGTTCAA
GTCCCAGCAACAGCATGGTGGCTCACAACTATCTGCAATGGGATCTGATG
CCCTCTTCTGGTGTGTCTGAAGACAGCAACAGCATACTCACATACATAAC
TTAAATAAAAAATTCTTTAAAAAATGAGAAGATTGTGCATTAGGCATTCC
TGAAAATTGGGGGGAGGGGCAGGTAGAAAGATACCAGAGACAACGGTGGC
ATTGCTGTCATTGTGGACCATGCATTTGGATTTCTTCTTCATAGTCTTCA
ACAAGCTTAAGCAAGGTACTTGGAGTCCAGACTTATATTCTGCTGTATGG
AATGT
ATGAAGTGGTAGGCTGGCGGCGCCTGGCTCCGACTTTAGGTGAACTATAG
AAGTTCCCCGAAATTCCCATAAAACCAGAGACACTGCAACTAATAGAGGA
AAAGTAGGGAAAAGTCTCGAAGATATGGGTAGTGTTGAAATATTCCTAAA
TAGAACAGCAATGGCGTGTGCTGTAATATTTAGAATCAATGAATGGGACC
TCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACCTTCAGTAAGACA
AAAGAACACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATTTATA
GGAGACTAATATCCAATATATATAAAGAACTCAAGACGGTGGACTCCAGA
AAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATT
CTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGAGTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCAGATG
CTGGTGAGGATGTGGAGAAAGAGGCACACTCCTCCATTGTTGGTAGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAAA
TTGGACATAGTACTACTGGAGGATCCAGCAATACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l18.b1 MSMg01no060_l18.b1 CHROMAT_FILE:
MSMg01no060_l18.b1 PHD_FILE: MSMg01no060_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:32 2005
         (592 letters)



>mm_chr10_57165746_57166737
          Length = 992

 Score =  754 bits (390), Expect = 0.0
 Identities = 457/480 (95%), Gaps = 4/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccctgctcatttagccttgcctgatccatcactttctgaagggttttggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattctttccctgctcatttagccttgcctgatccatcactttctgaagggttttggca 420

                                                                       
Query: 65  tttctagaaaggagtttagattgtttgtgatgccca-gtcaggagataaaatggagacgt 123
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 419 tttctagaaaggagtttagattgtttgtgatg-ccaggtcaggagataaaatggagacgt 361

                                                                       
Query: 124 ggggaggatagatggtcagctaatttcattctgtgagtcagaaatcatgggccagattag 183
           ||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||| ||||
Sbjct: 360 ggggaggatagatggtcggctgatttcattctgtgagttagaaatcatggaccagtttag 301

                                                                       
Query: 184 gagcaaagatcaggtgtgtagggaaatgaagacagagaaggaagcatgaggaaagaagag 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagcaaagatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaagaagag 241

                                                                       
Query: 244 agaccagggttttggggattagaaaccaggagattgggggctggagagatggctcagtgg 303
           ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 240 agagcagggttttggggattagaaaccaggagattgggggctagtgagatggctcagtgg 181

                                                                       
Query: 304 gtaagagcactggttactccctgaggtcctgagttcaagtcccagcaacagcatggtggc 363
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtaagagcactggttactccttgaggtcctgagttcaagtcccagcaacagcatggtggc 121

                                                                       
Query: 364 tcacaactatctgcaatgggatctgatgccctcttctggtgtgtctgaagacagcaacag 423
           ||||| | ||||| ||||||||||||| | ||||||||||||||||||||| ||  ||||
Sbjct: 120 tcacagccatctgtaatgggatctgatactctcttctggtgtgtctgaagagagtgacag 61

                                                                       
Query: 424 catactcacatacataacttaaataaaaaattcttt--aaaaaatgagaagattgtgcat 481
           ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||
Sbjct: 60  catactcacatacataacttaaataaaaaattctttaaaaaaaatgaggagattgtgcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)