BAC Information

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BAC

Clone NameMSMg01-061F06
Chromosome10 (Build37)
Map Location 100,649,220 - 100,649,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061F06.T7 (MSMg01no061_f06.b1)MSMg01-061F06.TJ (MSMg01no061_f06.g1)
ACCAG287563AG287564
length740731
length of high quality
(start - end)
304 (71 - 374)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no061_f06.b1 PHD_FILE: MSMg01no061_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:16 2005CHROMAT_FILE: MSMg01no061_f06.g1 PHD_FILE: MSMg01no061_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGTCCGCGGAATT
CACACATTTTTACCTATTGGATTCATTTTGTTTCTAGTTTGTAATTTTAT
TTTATGGTGCCTACTCATAATCTTGTTTTATGACTTTTCTAGAGTTTTTA
ACACTAAAAAGTTATATTATTCTCAAATGAATTGAGATTTGCACATCACA
ATTTTAACCTGGTTTTCATTGAATGTATTAAATAGTAAGGAAGATAATAA
GATTCAGGATTTTATATATAATGACATAATTATTTCCTGCCCCTTCCATC
AATCTATATTAACATGACAATATCAGTACTACTGTGATTGATGTGTGATT
ATAATCTTTTCGTATAACTTGGCTTTAATAAATTAGGAAAACTTCATTTT
GTAATGCCAAGATATTTTGCACATGATTAGGTTAACAGAATTCTGATATT
TTACATTACCATTAACAAATATGTTTGTCTAAAGAAATGCTACACATTGG
CACATCATTTTATATCCATGTAACTCTTCATTGCAGGTAAATGGTTGGAA
TTAGAAAATATCATATTGAGTGAAGTAACCCAGGTCTAGAACCTCAATTA
ATCAAATGATCACACCTGGTTTCCAAGTGCCCACTCCTCCACATATGAAT
GCATTCACCTGTACTACGTCCGTACAAAATGCTCATGAAGCAGTACATTT
TTGGGGGGCTATGGTTTTATCTTTATACTAAGCAAAAAAG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCCTCTTATGCTTTCATTATTACTTCT
ATTTTTATTGTCAGCTGTTCAACAATTTCATTTGTTTCCCTCAAATATTT
GTTTGTGTTTCCCTGGATATCTTTAAGGGCTTTATTCCTTTTCTCTTTAA
AGACTTTTGTCATCTTCATATGGTTGGTTTTAAAGACTTCTTCTTGTGCT
TCTGGCATGTTGAAATATTAAACACCTTCTGTTGTATGACAGCTGGGTTC
CATTGTATGGGTATTTATCTAATTGTTATTGATTTTGATCTTTTGCTCAA
ATCTAGTAATCTTGGCTCGGGGCGATTAAATTTCTAGGTGCTGTAGCTGA
ATTTGTCTCTGTTGACCGCCTATTGTTCATCAACCTCTGTTCCTTTCATG
ATTTTCAGAGAATATGACATCTCTGTGTCCGCCTGATTTGACAATCTGTT
CGGTTTGTATGCTCTTATTCTCTACAGTTACCGCTCCGTCCTGTCGCTAT
CTGATATTCTGCTTTCCTTCGTTTTCAGCGTTTCCATTCTTTACCCAGCT
ATGTCCCGTTCTCACCTTATTCCCTTTGTCCTACTATTATTCTTGTCATT
GCCCTCCGTTGTATTCCCTGTCAATTTCACTACACATTTCGCACTTTTCT
CTCCCTACTGTTCCTCTTTTCCTCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_f06.b1 MSMg01no061_f06.b1 CHROMAT_FILE:
MSMg01no061_f06.b1 PHD_FILE: MSMg01no061_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:16 2005
         (304 letters)



>mm_chr10_100649020_100649723
          Length = 704

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattttgtttctagtttgtaattttattttatggtgcctactcataatcttgtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcattttgtttctagtttgtaattttattttatggtgcctactcataatcttgtttta 260

                                                                       
Query: 61  tgacttttctagagtttttaacactaaaaagttatattattctcaaatgaattgagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacttttctagagtttttaacactaaaaagttatattattctcaaatgaattgagattt 320

                                                                       
Query: 121 gcacatcacaattttaacctggttttcattgaatgtattaaatagtaaggaagataataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacatcacaattttaacctggttttcattgaatgtattaaatagtaaggaagataataa 380

                                                                       
Query: 181 gattcaggattttatatataatgacataattatttcctgccccttccatcaatctatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcaggattttatatataatgacataattatttcctgccccttccatcaatctatatt 440

                                                                       
Query: 241 aacatgacaatatcagtactactgtgattgatgtgtgattataatcttttcgtataactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatgacaatatcagtactactgtgattgatgtgtgattataatcttttcgtataactt 500

               
Query: 301 ggct 304
           ||||
Sbjct: 501 ggct 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)