BAC Information

Click to search

BAC

Clone NameMSMg01-061L14
Chromosome10 (Build37)
Map Location 103,413,128 - 103,413,458
singlet/doubletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061L14.T7 (MSMg01no061_l14.b1)MSMg01-061L14.TJ (MSMg01no061_l14.g1)
ACCAG287867AG287868
length771975
length of high quality
(start - end)		331 (73 - 403)---
definitionCHROMAT_FILE: MSMg01no061_l14.b1 PHD_FILE: MSMg01no061_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:47 2005CHROMAT_FILE: MSMg01no061_l14.g1 PHD_FILE: MSMg01no061_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCAAAAACAGCG
GAATTCTTAAATACAGTTCCAGTTTTATAAAAATTCTGCCAAATGCTACT
GTCAGAATGTTCATACAAATATAATGATGCACAACTGTGAGAATCAGTAT
ACATTTAATGTACAAAAACATGTTTTCAATTCAACCCCACATTTGTTTTT
GTTCTTGTTTTAACACCAAAGAAGCCAGGTTGAATAAGGAAAGGCATGTT
TTATCTCCAAATTCAAAGCCTCAAGTATAACAGTCTTAATGCATGCTTGC
TGAAACTGAGGCTCCTCAATGTAAACCTTATAGTTTTGCATAAAATATTT
GCTGTCTGCAGAATTTTTTGTTTGCAAATATAGAACTCATTTATTTTATC
CAGGTTGTAGTGCTGAAGTGTGTTTAGTGAGCAGTTTGTAGGATATGATA
CTGTTCACGATTTCTTTACTATTATCTTCAACTAATATATTAACTATCTG
TCACACTCTTCCATCTGCTATTCAATTTCAAAACTTCTTATTTAATTTAT
AAATGAATTTGATCAAATATTTATACATAATACCTGTCCTACATTCTTTA
TTTACTTTCTAATTTCAATTTTATTTTATCTTTTTAATTTAACTTTTCCT
CTTTTATCTTTTCCTATCTATATTCTATTATAACTCATTTCTCTTATTTG
TCACATATTTATTAATTTACTATTAAAAAATATCATTTCTTTAATTACCT
TTCACTCCATACTAAATTATN

ATAAGAGAGGGGGATGGTAGGCAGAGAATCCCTAATTATTAGTAATAATT
CCTCTACAGTTTCCCGATAAAAGGAGGAAGGTACACGACGTATAAACGAA
GAAAACACGGTAATACCCAATATATAAAACGGAGGGGCAAGGTGAGGAGA
AGGAACGGTATGAACGCGGATGGGTATAAACCCGTAGGATTTGCACATCT
GAGAGAATACTGGACAACCGATATATAATATAGAATGCTCATTCGATACC
AGCATATACGAATGGCAGGGACCTGAGCACCCGTTGGTGCACCCATTGTT
CCCATGGGATGCAGTTGCTGAGACCAGAGAAGAGCAGATGTTGCAAAAAT
GCCCACTAGTTTATACCGCCGTTCCATCGCCGCGGGATACGGCGTATGAA
TACGTGATAGTTTGACGGGGATGAAGCCGCATATTAATTTAAGCCGCGGA
TTAGGCCGCCCCCTTAACCCCCTATGACGGGCCGAGGTTAATTGTAAATA
GGCGCGGGTAACGTAGGAGGCCAATTCCGCGCGTTTATAACACGGAATAT
AGACGCGTATGATTTATACAAGTAGCGAGCAGAGACACGCGGTCTATAGT
GTAGACGCGGAGATGCGAACATCCACTTATGTCAATACACGGAAAATCGT
AATCGCCAGATGAGTTAAACCGTGATAATACTTAGAAGATTGCGCGTGCG
CAAGTCCGGTGTAAACAAACTATGGACGGTGACGTAGATGTTGGGTGTAG
TATGGAAGCGTGTATCCGCTTACGATTAGCAACGAATATGTCAAGAGTGG
TTTGGTCGAGCAATAAGATCCACATTTGTTTGCCGTGACGAAGGATAATG
CCGCAGCGTAATGGCCGACACTAAAGATAATTAGGGGGGGAGAGAGGAAA
GGACAAGTGACGCGTAGAGGCAGCGTTAGGACATGCGACTTAGCTCGATC
TCTCCTGTTGGAGGTGACGACGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_l14.b1 MSMg01no061_l14.b1 CHROMAT_FILE:
MSMg01no061_l14.b1 PHD_FILE: MSMg01no061_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:47 2005
         (331 letters)



>mm_chr10_103412928_103413658
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttataaaaattctgccaaatgctactgtcagaatgttcatacaaatataatgatgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttttataaaaattctgccaaatgctactgtcagaatgttcatacaaatataatgatgcac 472

                                                                       
Query: 61  aactgtgagaatcagtatacatttaatgtacaaaaacatgttttcaattcaaccccacat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aactgtgagaatcagtagacatttaatgtacaaaaacatgttttcaattcaaccccacat 412

                                                                       
Query: 121 ttgtttttgttcttgttttaacaccaaagaagccaggttgaataaggaaaggcatgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttgtttttgttcttgttttaacaccaaagaagccaggttgaataaggaaaggcatgtttt 352

                                                                       
Query: 181 atctccaaattcaaagcctcaagtataacagtcttaatgcatgcttgctgaaactgaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atctccaaattcaaagcctcaagtataacagtcttaatgcatgcttgctgaaactgaggc 292

                                                                       
Query: 241 tcctcaatgtaaaccttatagttttgcataaaatatttgctgtctgcagaattttttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcctcaatgtaaaccttatagttttgcataaaatatttgctgtctgcagaattttttgtt 232

                                          
Query: 301 tgcaaatatagaactcatttattttatccag 331
           ||||||||||| |||||||||||||||||||
Sbjct: 231 tgcaaatatagtactcatttattttatccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |