Query= MSMg01no061_n08.b1 MSMg01no061_n08.b1 CHROMAT_FILE:
MSMg01no061_n08.b1 PHD_FILE: MSMg01no061_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:55 2005
(273 letters)
>mm_chr10_31168095_31168767
Length = 673
Score = 449 bits (232), Expect = e-130
Identities = 259/272 (95%), Gaps = 8/272 (2%)
Strand = Plus / Plus
Query: 3 ggaattcttcttga----ttgcccaagcaaacaagtctttttagtggccatacctggaac 58
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttcttgaaagttt----aagcaaacaagtctttttagtggccatacctggaac 258
Query: 59 acaccacacagacatgagactgagtcaatgaattcttgccctctctgtgagactccttct 118
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acaacacacagacatgagattgagtcaatgaattcttgccctctctgtgagactccttct 318
Query: 119 gaagaggtgatggtatagtggatagcatctatagccaagggaaggtgaactggcccgaag 178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 319 gaagaggtgatggtatagtggatagcatctatagccaagggaaggtgagctggcctgaag 378
Query: 179 cagctctaggccttccataatgcacagtgctgaaggtgctcatgagatgtgggcaggtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 379 cagctctaggccttccataatgcacagtgctgaaggtgctcatgagatgtgggcagggaa 438
Query: 239 taaaaataagatgaaagactggaaaggactag 270
||||||||||||||||||||||||||||||||
Sbjct: 439 taaaaataagatgaaagactggaaaggactag 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no061_n08.g1 MSMg01no061_n08.g1 CHROMAT_FILE:
MSMg01no061_n08.g1 PHD_FILE: MSMg01no061_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:55 2005
(290 letters)
>mm_chr10_31266075_31266765
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 1 agtttgttaattctgaagcgtctgccctgtggctcttttctgagcactcatggtgctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtttgttaattctgaagcgtctgccctgtggctcttttctgagcactcatggtgctgag 432
Query: 61 cacagttcagtattcttcgtgctcacgtggacatcttttctgaaatccgtctctgtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cacagttcagtattcttcgtgctcacgtggacatcttttctgaaatccgtctctgtcctt 372
Query: 121 tgaccagtatttctactgggttgattgtatttttttcactctttatattttctggttatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgaccagtatttctactgggttgattgtatttttttcactctttatattttctggttatg 312
Query: 181 taagacttgtcatttccgttttgtgaatatcatttcataattatgaatttctactcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 taagacttgtcatttccgttttgtgaatatcatttcataattatgaatttctactcttct 252
Query: 241 ata-ttttttttggtgagtataggtttaagttaacccgcttatatgatgaa 290
||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 251 atatttttttttggtgagtataggtttaagttaacccgtttatatgatgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
