Query= MSMg01no062_c19.b1 MSMg01no062_c19.b1 CHROMAT_FILE:
MSMg01no062_c19.b1 PHD_FILE: MSMg01no062_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:29 2005
(778 letters)
>mm_chr10_52645416_52646594
Length = 1179
Score = 1452 bits (751), Expect = 0.0
Identities = 772/779 (99%), Gaps = 1/779 (0%)
Strand = Plus / Plus
Query: 1 aaaccttttagccaagggcttttcagagtcagtgcactacaattcataacccaatataac 60
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 201 aaaccttttagccaagggcttttcagagtcagtggactacaattcataacagaatataac 260
Query: 61 agatgcttctcccacatccaagtgatattgcttttataccaacccgtatgcttaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgcttctcccacatccaagtgatattgcttttataccaacccgtatgcttaaatatt 320
Query: 121 ctttatatatgcatctccgaatgcatgtactgactcaaatctgatgaaacttccctgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttatatatgcatctccgaatgcatgtactgactcaaatctgatgaaacttccctgaga 380
Query: 181 ctcattttcagaatgaacatacctcaacaggaaggttgatttgttctaattcaagatgat 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctcattttcagaatgaacatacctcaacaggaaggttgatttgttctgattcaagatgat 440
Query: 241 agtataagtattccactctcatggtgaaaaaaaagttatagagtgatatgattatgtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtataagtattccactctcatggtgaaaaaaaagttatagagtgatatgattatgtaat 500
Query: 301 gctgtgttgacattcttgataccttttaaaagaacatatttttatgattaaaagaaacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtgttgacattcttgataccttttaaaagaacatatttttatgattaaaagaaacat 560
Query: 361 tagaatttatactttatttttaatcttattattttgaatgtttaatttgtaccagaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaatttatactttatttttaatcttattattttgaatgtttaatttgtaccagaggct 620
Query: 421 tatcccccaccccattctaaattctgtatctttaacaacacaatgctgttgataacaggc 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatcccctaccccattctaaattctgtatctttaacaacacaatgctgttgataacaggc 680
Query: 481 atatcagtatttatgagtacaagctctgttgtagtgggtattcagtttccagcaacacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atatcagtatttatgagtacaagctctgttgtagtgggtattcagtttccagcaacacca 740
Query: 541 ttttttcctgagactcatgcatttttcattgtctagtccgtctgcatttaaagtggatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttcctgagactcatgcatttttcattgtctagtccgtctgcatttaaagtggatga 800
Query: 601 gatgtccttttaaatgcacaaagaagatgaaaatgtgtatcataacctcctttccatttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatgtccttttaaatgcacaaagaagatgaaaatgtgtatcataacctcctttccatttc 860
Query: 661 tgctactaaaattataggaactctgtatctatgttagaatgcatctgctgtgctgtgctg 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 tgctactaaaattataggaactctgtatctatgttagaatgcatctgctgcgctgtgctg 920
Query: 721 tatacgacatgaataaccaacagctcactctgcaaaatt-cacccagcaccatttttag 778
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 921 tatacgacatgaataaccaacagctcactctgcaaaatttcacccagcaccatttttag 979
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1179
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1169
Effective search space: 897792
Effective search space used: 897792
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_c19.g1 MSMg01no062_c19.g1 CHROMAT_FILE:
MSMg01no062_c19.g1 PHD_FILE: MSMg01no062_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:29 2005
(687 letters)
>mm_chr10_52792603_52793690
Length = 1088
Score = 1263 bits (653), Expect = 0.0
Identities = 680/689 (98%), Gaps = 3/689 (0%)
Strand = Plus / Minus
Query: 1 gttcggataatggattcttcccagacatttgagatcccgtacagggtggctcctcctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gttcggataatggattcttcccagacatttgagatcccgtacagggtggctcctcctaag 689
Query: 61 accagaaggtctcctaccagcttattttctcctaggaaacaaacaaacaaaaaagcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 accagaaggtctcctaccagcttattttctcctaggaaacaaacaaacaaaaaagcagat 629
Query: 121 ggagactcagaaaaaatttcttcacaaggacctagcaccagaaaaaggagc-tttttttt 179
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 628 ggagactcag-aaaaatttcttcacaaggacctagcaccagaaaaaggagcttttttttt 570
Query: 180 tcta-tttttttctgatactttcataagaagcccagcaatttacaaccaaaatcaccata 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctattttttttctgatactttcataagaagcccagcaatttacaaccaaaatcaccata 510
Query: 239 aagatttttaaaatgtgttttctagatgtgttgttatataaaaagctacttatattcata 298
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 509 aagatttttaaaatgtgttttctagatgtgctgggatataaaaagctacttatattcata 450
Query: 299 aaactggaagtttcctctaagaatgaagtttttgcttaattctcttcaatgcccacgttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaactggaagtttcctctaagaatgaagtttttgcttaattctcttcaatgcccacgttt 390
Query: 359 ctgtctaggaaggtttctgcaaatatacactaatatgtatgcatactattttttgtttca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgtctaggaaggtttctgcaaatatacactaatatgtatgcatactattttttgtttca 330
Query: 419 gggcactttttggctgtcttgtgaatctgttataaatccaacagtcattttctaccattt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gggcactttttggctgtcttgtgaatctgttataaatccaacagtcattttctaccattt 270
Query: 479 ctatgcagggagagaaggcatggcagtagtcaacactatgtttttgaccatgggcaaaat 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctatgcagggagagaaggcatgacagtagtcaacactatgtttttgaccatgggcaaaat 210
Query: 539 gtgcccaaggaggccgggcagtggtggcacacgcctttaatcccagcactcgggaggcag 598
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtgcccaagtaggccaggcagtggtggcacacgcctttaatcccagcactcgggaggcag 150
Query: 599 aggcaggcagatttctgagtgcaaggctagcctggtctacagagtgagttccaggacagc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aggcaggcagatttctgagtgcaaggctagcctggtctacagagtgagttccaggacagc 90
Query: 659 cagggctacacagagaaaccttgtctcaa 687
|||||||||||||||||||||||||||||
Sbjct: 89 cagggctacacagagaaaccttgtctcaa 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
