Query= MSMg01no062_d20.b1 MSMg01no062_d20.b1 CHROMAT_FILE:
MSMg01no062_d20.b1 PHD_FILE: MSMg01no062_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:37 2005
(301 letters)
>mm_chr10_22164002_22164704
Length = 703
Score = 416 bits (215), Expect = e-121
Identities = 272/293 (92%), Gaps = 8/293 (2%)
Strand = Plus / Plus
Query: 11 tcatgaacacatacatgtgcatctcaaattatatcattgaactaggtctgagaatttatc 70
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 211 tcatgaacacatacatgtgcatctcaagttatatcagagaactaggtctgagaatttatc 270
Query: 71 tcaccctcacctggccccctaaagaagccacctagccctgcaatgctcatggcccccaca 130
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 271 tcaccctcacctggtcccctaaagaagccacctaaccctgcaatgctcatggtgcccaca 330
Query: 131 aacttgcccctgtctgtttgtgtgtcaaggaaccttcagacagaggactcctggccatct 190
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 gacttgcccctgtctgtttgtgtgtcaaggaaccttcagacagaggactcttggccatct 390
Query: 191 t--aaggcttcagctccatccacaatgctaaagcctcctgcttgaa--atgctgtctgac 246
| ||||||||||||||||||||| ||||||||||||||||||| | | |||||||||
Sbjct: 391 tttaaggcttcagctccatccacactgctaaagcctcctgcttggatca--ctgtctgac 448
Query: 247 agttcatctgctgctcca-tgttaatgtgggtctgcatctcacctgctggatc 298
| |||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 449 aattcatctgctgctc-agtgctaatgtgggtctgcatctcacctgctggatc 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 703
Length adjustment: 9
Effective length of query: 292
Effective length of database: 694
Effective search space: 202648
Effective search space used: 202648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_d20.g1 MSMg01no062_d20.g1 CHROMAT_FILE:
MSMg01no062_d20.g1 PHD_FILE: MSMg01no062_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:37 2005
(693 letters)
>mm_chr10_3049885_3050979
Length = 1095
Score = 1278 bits (661), Expect = 0.0
Identities = 686/695 (98%), Gaps = 2/695 (0%)
Strand = Plus / Minus
Query: 1 ctttgagaactacagatctaggtgaggctcagagtagagatagttaagaagatctggcaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 895 ctttgagaactacagatctaggtgaggctcagagtagagatagttgagaagatctggcaa 836
Query: 61 aagactaagttaggattgtgtttagtggagaggatcagaagcctgagaagaagaag--aa 118
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 835 aagactaagttaggattgtgtttggtagagaggatcagaagcctgagaagaagaagaaaa 776
Query: 119 aaaacctattattttcattttgaggaaatatattttttctaacccctccaacattaatgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaaacctattattttcattttgaggaaatatattttttctaacccctccaacattaatgt 716
Query: 179 atgtgattgatacggattaaacttgtagatgctcagataatagttcaaaaccagtgctca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 atgtgattgatacggattaaacttgtagatgctcagataatagttcaaaaccagtgctca 656
Query: 239 gtgtttcatcttctttctagacactccatcctgctcatggggatgtgtattctactgctg 298
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 655 gtgtttcaccttctttctagacactccatcctgctcatggggatgtgtgttctactgctg 596
Query: 299 gcaaaccacacagattggtaaggaaggtcttggcactcaggcttgatgagtgttgactaa 358
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcaaaccacacagactggtaaggaaggtcttggcactcaggcttgatgagtgttgactaa 536
Query: 359 cccagcagaggctacaaataaccctgtgatccctcagatgaaaggcataaaactgcagac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cccagcagaggctacaaataaccctgtgatccctcagatgaaaggcataaaactgcagac 476
Query: 419 ctctcttgaacatgaatcatggtttaaatatgcattaagattattttcctaagagcgcat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctctcttgaacatgaatcatggtttaaatatgcattaagattattttcctaagagcgcat 416
Query: 479 ctctcacccccgctaccagtccaagaatggtagtactgaccgtgctttgaggaacgccca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctctcacccccgctaccagtccaagaatggtagtactgaccgtgctttgaggaacgccca 356
Query: 539 tcacttaactgtggctttcttaaagcagggtgtgtacgtttaattagttttaattgaaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcacttaactgtggctttcttaaagcagggtgtgtacgtttaattagttttaattgaaag 296
Query: 599 accaattaacagtgtttcaacatagaacaacatgataaaagttgacttttttacttcctg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 accaattaacagtgtttcaacatagaacaacatgataaaagttgacttttttacttcctg 236
Query: 659 agctactgaatcatctctggtgactctgacagaac 693
|||||||||||||||| ||||||||||||||||||
Sbjct: 235 agctactgaatcatctgtggtgactctgacagaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1095
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1085
Effective search space: 741055
Effective search space used: 741055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
