MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-062F20
Chromosome	10 (Build37)
Map Location	84,448,569 - 84,449,298
singlet/doublet	singlet
Overlap gene	Ric8b
Upstream gene	C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690
Downstream gene	Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2
Link	Open Mouse BAC browser

Click to get alignment info.

name	C230099D08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320212 MGI:2443595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC432482 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:432482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 17 Proteins pseudo : _no_value

name	Nuak1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77976 MGI:1925226
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ckap4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216197 MGI:2444926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcp11l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216198 MGI:2444679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Polr3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70428 MGI:1917678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rfx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71137 MGI:1918387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG625690 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625690 MGI:3643042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins

name	Ric8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237422 MGI:2682307
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Fhl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14202 MGI:1338765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI597468 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103266 MGI:2143652
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mterfd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74238 MGI:1921488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cry1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12952 MGI:1270841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666974 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666974 MGI:3647964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 389 ESTs, 7 Proteins

name	Btbd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74007 MGI:1921257
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG626858 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626858 MGI:3645890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 Proteins

name	LOC626878 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC669723 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC626940 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 67 Proteins pseudo : _no_value

name	Pwp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103136 MGI:1914735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prdm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72843 MGI:1920093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ascl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67341 MGI:1914591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	D10Wsu52e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28088 MGI:106379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bpil2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270757 MGI:3026884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C230099D08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260972 GeneID:320212 MGI:2443595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA C230099D08 gene transcript_id : XM_001476017.1

name	Nuak1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52138543 GeneID:77976 MGI:1925226
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NUAK family, SNF1-like kinase, 1 transcript_id : NM_001004363.1

name	Ckap4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62526117 GeneID:216197 MGI:2444926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytoskeleton-associated protein 4 transcript_id : NM_175451.1

name	Tcp11l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130244 GeneID:216198 MGI:2444679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : t-complex 11 (mouse) like 2 transcript_id : NM_146008.2

name	Polr3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46195738 GeneID:70428 MGI:1917678
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (RNA) III (DNA directed) polypeptide B transcript_id : NM_027423.1

name	Rfx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906190 GeneID:71137 MGI:1918387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X, 4 (influences HLA class II expression) transcript_id : NM_001024918.1

name	EG625690 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261075 GeneID:625690 MGI:3643042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins product : predicted gene, EG625690 transcript_id : XM_894484.3

name	Rfx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892183 GeneID:71137 MGI:1918387
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X, 4 (influences HLA class II expression) transcript_id : NM_027689.3

name	Ric8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34147208 GeneID:237422 MGI:2682307
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) transcript_id : NM_183172.1

name	Ric8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61806724 GeneID:237422 MGI:2682307
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) transcript_id : NM_001013441.1

name	Fhl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802955 GeneID:14202 MGI:1338765
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four and a half LIM domains 4 transcript_id : NM_010214.3

name	AI597468 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61557490 GeneID:103266 MGI:2143652
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI597468 transcript_id : NM_001013028.1

name	Mterfd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388641 GeneID:74238 MGI:1921488
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MTERF domain containing 3 transcript_id : NM_028832.2

name	Cry1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55742745 GeneID:12952 MGI:1270841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cryptochrome 1 (photolyase-like) transcript_id : NM_007771.3

name	EG666974 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388525 GeneID:666974 MGI:3647964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 389 ESTs, 7 Proteins product : predicted gene, EG666974, transcript variant 2 transcript_id : XM_001002751.1

name	Btbd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62953117 GeneID:74007 MGI:1921257
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 11 transcript_id : NM_028709.1

name	Btbd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62953119 GeneID:74007 MGI:1921257
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 11 transcript_id : NM_001017525.1

name	EG626858 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260990 GeneID:626858 MGI:3645890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 Proteins product : predicted gene, EG626858 transcript_id : XM_891465.2

name	Pwp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386883 GeneID:103136 MGI:1914735
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PWP1 homolog (S. cerevisiae) transcript_id : NM_133993.2

name	Prdm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61676180 GeneID:72843 MGI:1920093
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PR domain containing 4 transcript_id : NM_181650.2

name	Ascl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260995 GeneID:67341 MGI:1914591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : achaete-scute complex homolog 4 (Drosophila) transcript_id : XM_986783.2

name	D10Wsu52e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370951 GeneID:28088 MGI:106379
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 10, Wayne State University 52, expressed transcript_id : NM_145422.2

name	Bpil2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802277 GeneID:270757 MGI:3026884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bactericidal/permeability-increasing protein-like 2 transcript_id : NM_177772.3

name	C230099D08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260973 GeneID:320212 MGI:2443595
definition	codon_start : 1 product : hypothetical protein LOC320212 protein_id : XP_001476067.1

name	Nuak1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52138544 CCDS:CCDS24079.1 GeneID:77976 MGI:1925226
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : ZNUAK family, SNF1-like kinase, 1 protein_id : NP_001004363.1

name	Ckap4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62526118 CCDS:CCDS24080.1 GeneID:216197 MGI:2444926
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cytoskeleton-associated protein 4 protein_id : NP_780660.1

name	Tcp11l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122471 GeneID:216198 MGI:2444679
definition	codon_start : 1 product : t-complex 11 (mouse) like 2 protein_id : NP_666120.1

name	Polr3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46195739 CCDS:CCDS24081.1 GeneID:70428 MGI:1917678
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : RNA polymerase III subunit RPC2 homolog product : RNA polymerase III subunit RPC2 protein_id : NP_081699.1

name	Rfx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906191 CCDS:CCDS24082.1 GeneID:71137 MGI:1918387
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; winged-helix transcription factor RFX4 product : regulatory factor X, 4 isoform 1 protein_id : NP_001020089.1

name	EG625690 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261076 GeneID:625690 MGI:3643042
definition	codon_start : 1 product : similar to Ac2-210 protein_id : XP_899577.2

name	Rfx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906189 CCDS:CCDS24083.1 GeneID:71137 MGI:1918387
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; winged-helix transcription factor RFX4 product : regulatory factor X, 4 isoform 2 protein_id : NP_081965.2

name	Ric8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147209 CCDS:CCDS24085.1 GeneID:237422 MGI:2682307
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; resistance to inhibitors of cholinesterase 8B product : resistance to inhibitors of cholinesterase 8B isoform 2 protein_id : NP_898995.1

name	Ric8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61806725 CCDS:CCDS24084.1 GeneID:237422 MGI:2682307
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; resistance to inhibitors of cholinesterase 8B product : resistance to inhibitors of cholinesterase 8B isoform 1 protein_id : NP_001013459.1

name	Fhl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560590 CCDS:CCDS24086.1 GeneID:14202 MGI:1338765
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : four and a half LIM domains 4 protein_id : NP_034344.2

name	AI597468 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61557491 CCDS:CCDS24087.1 GeneID:103266 MGI:2143652
definition	codon_start : 1 product : hypothetical protein LOC103266 protein_id : NP_001013046.1

name	Mterfd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46518496 CCDS:CCDS24088.1 GeneID:74238 MGI:1921488
definition	codon_start : 1 product : transcription termination factor-like protein protein_id : NP_083108.1

name	Cry1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681031 CCDS:CCDS24089.1 GeneID:12952 MGI:1270841
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003913 - DNA photolyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence IDA] [Evidence IMP]; GO:0006281 - DNA repair [Evidence IEA] codon_start : 1 product : cryptochrome 1 (photolyase-like) protein_id : NP_031797.1

name	EG666974 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388526 GeneID:666974 MGI:3647964
definition	codon_start : 1 product : similar to zeta proteasome chain; PSMA5 isoform 2 protein_id : XP_001002751.1

name	Btbd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62953118 CCDS:CCDS24091.1 GeneID:74007 MGI:1921257
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : BTB (POZ) domain containing 11 isoform 1 protein_id : NP_082985.1

name	Btbd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62953120 GeneID:74007 MGI:1921257
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : BTB (POZ) domain containing 11 isoform 2 protein_id : NP_001017525.1

name	EG626858 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260991 GeneID:626858 MGI:3645890
definition	codon_start : 1 product : hypothetical protein protein_id : XP_896558.2

name	Pwp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923062 CCDS:CCDS24092.1 GeneID:103136 MGI:1914735
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : nuclear phosphoprotein similar to S. cerevisiae PWP1 product : periodic tryptophan protein 1 homolog protein_id : NP_598754.1

name	Prdm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61676181 CCDS:CCDS24093.1 GeneID:72843 MGI:1920093
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : PR domain containing 4 protein_id : NP_857633.2

name	Ascl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260996 GeneID:67341 MGI:1914591
definition	codon_start : 1 product : achaete-scute complex homolog 4 protein_id : XP_991877.2

name	D10Wsu52e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703842 CCDS:CCDS24094.1 GeneID:28088 MGI:106379
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : hypothetical protein LOC28088 protein_id : NP_663397.1

name	Bpil2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244288 GeneID:270757 MGI:3026884
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0001530 - lipopolysaccharide binding [Evidence ISS]; GO:0005543 - phospholipid binding [Evidence ISS] codon_start : 1 product : bactericidal/permeability-increasing protein-like 2 protein_id : NP_808440.1

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 3 pseudo : _no_value

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 2 pseudo : _no_value

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 1 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 1 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 2 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 3 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 4 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 5 pseudo : _no_value

name	LOC626940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626940
definition	number : 1 pseudo : _no_value

name	LOC432482 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261069 GeneID:432482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 17 Proteins product : similar to nucleoside diphosphate kinase B pseudo : _no_value transcript_id : XR_034427.1

clone name	MSMg01-379A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486O19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-305A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429N20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-446E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455H20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-113P22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-519P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-190I02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-386P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-105O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-062F20.T7 (MSMg01no062_f20.b1)	MSMg01-062F20.TJ (MSMg01no062_f20.g1)
ACC	AG288356	AG288357
length	1,173	1,286
length of high quality (start - end)	641 (121 - 761)	---
definition	CHROMAT_FILE: MSMg01no062_f20.b1 PHD_FILE: MSMg01no062_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:53 2005	CHROMAT_FILE: MSMg01no062_f20.g1 PHD_FILE: MSMg01no062_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:53 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CAAGATTTNNNNGACATTCGGCGTATAGACTCCTAAGGGAGAGGATCCGC GGAATTCAATGTGGGACCGGACCGTTAAGAGCCAAGGAGACTGAAAAGAA CGGCTGTCAAACTTTGAACAGGCCTGGCCCCCCACAGACATATTGAGAAG CGCATGCAATATCATCAGTATTTCAAGATTCCAAGATGCAAAAGCTTAAA AAAAAATTAAACCCAAGCACAAAGAGGACCAACTCACAGAGGAAGGCTTC TAGGAAGACAGGAAGAAAAACATGAACGGCAAAGAAGCAGCTTAGCAGCA AGCTAGAGAGAGGCCAAAGGCCCGCCCGCACCCTGAGCTGGAGGGAGGCA CACGCAGGGGGCACAGAGCTGCAGGTGGCACAGGGCTGCAGGGGGCGCTG TTGGACAAGGCAGCTCAAGCTGAACTGATTGTAACTCACCCTACCACTTC CGTATGTGGCTGCCACATACGGAAGGTGTGAAATGTTTCACAGATCACTT TCTTTTGGCTAAACTATGTAGACTATTTTTAAGGAGCTGGAAGAGAGTAT ATTATTGTAAGAAGAATTGTACTGAAATGTTAGCAGGCAAAACGATGCGC TTCCTTGGCTGTTTCCCTACTCACCGCATTATGGCTGCTGCTTTTTTTTT TTTAAAGATTTTATTTATTTTATGTATGTGAGTACACTGTAGCTGTACAG ATGGTTGTGAGCCTTCATGTGGTTGTAGGGAATTGAATTTTTAGGACCTC CGGTTGGCTCTATTTGTTCTGGTCTCCTCCGCCTGCTCAGTCCTTCTCGC TCTGGCCCTAAGATTTATTTATTATTATACATAAGTACACTGTAGCTGAC TTCAGGCCCACCAGATAAGGGCATCAAATCCCATTACAAATGTTTGTGAG CCACCATGTGTTTGCTGCCAATTGAACTCTATATCTTTGGTAAAATCATT CTTTGCTCTAACCCGTTGAACCCTTCTCTCCATTCTCTAATGTCGGTTTT TTAACCCATTTTTTTTCCTTCCCCCTTAACCCCTTTCTGTGCCGGTTTTC CCTTTTTCTTTGAAAAACAGTCCTTTCTCTGTCTTTTTTATAATTATAGT TCTTTCTTATTAATTGGTACCCCTCAAGTTCTTTGGGTTTCCTCTTTAAA AAAATCTCCTCTTAATCCATTTT	TTTTGAGATAGGTAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXAAGATCTAGTGAGGGAGGGGTGGGGTGGG GGCTGCCTTTATATAATTTAACACCCCCCATTGTTAAATTTATGTAGTAT TGAATTACATTTAAAAATCATCAGATTGTAGGATGGAGAGATGGTTCAGC AGTTAAGTAGTCCTGGTTGTTCTTCCACAGGACTTGGGTTCAATTCCTAG TATCTACATGTTGGCTCACAACTCACTGTAATTCTATTGCTTTCTTCTGG TCTCTGTAGGCATTGCATGTATGTGTTACAGAGACACACATGTATGCATA ATATCCTATTTTATAAATTATCATAATTGAATGGAACCATTTTTTTTTTT CAACGGACAGTCTTGTGGGAAATTTTTAATTATGTTGTATGTATGTTTTG CTTTTTCTATTTAGTTGATTTTTATATTTTTAATTTTATTTTAATGTTTT TTTGTTTTTTTTGTTTTTTTTTTTTTTTTCTATTTTTATTTTTTTTTATT TTTTTATTTGTTTTATATCTTTTTTTTTTATTTTTTTTTTTTTGTTTATT TTTTTTTTTTTTTTTTTTATTTTTTTTTTTTATTTTTTTTTTTTTTTTTT TTTTTTTATTATTTTTTATTTTATTCTTTTTTTTATTTTTTTTATTATTT TATTTTATAGATTCTTTTTATTTTTCTATTTATTATTTTTTTTTTATTTT TTTATATTTTTATATTTTTAATTTATTATTTATCTTCTATTTTATATTTT TTTATTTTATATTTTTTTATTATAATTATTTTTTATTTTATTATTATTTT TTTTATTGTTATATTTAATTTTTTCTCTTTTTTATTTTTTTTTTTTTTGT TATTTTTTTTAATCTATTTTTTTTTTTATTTTTTTATTTTTTATTATTTT TATTAATTCTTTCGCTTTATTTCATTATTATTTTTATTTTTTTTATTATT ATTTTATTGTTTTTATATTTTTTTTTATTATATGTTTTGTTATTTTTTAT TTTATTATTTTTTTTTCAAATTTTTTATTTTTTTTCTTTTATAATTTTAC TTTTTTTTATTCTAGTTATATTCTATTATATTTATTTATTTATTACTTTT ATTTTTTTTTATATTATATTCATTTTTTTTGTATTTTTTATTTTATTATT TTTTTTTATATTTTTTATTCTTTTTTTTTCTTATTTTACTTGTAATATTC TTATTAATTAGATTTAAGTCATATTATTTATATTTA
quality values	Open. Hide. 6 6 6 6 6 6 8 3 0 0 0 0 3 9 9 9 11 11 11 11 8 8 8 6 6 6 8 8 10 12 8 8 8 10 8 8 8 21 19 24 28 28 28 34 37 44 53 50 50 50 50 50 50 42 36 57 53 53 35 35 35 31 31 28 33 33 33 21 19 8 7 7 7 6 8 8 8 7 8 8 8 11 12 12 12 24 26 37 33 31 31 31 36 36 36 53 57 53 53 53 53 36 31 31 31 30 21 22 9 9 9 10 9 9 9 8 8 8 8 13 15 30 33 33 31 31 31 23 19 10 10 10 10 11 11 16 16 34 34 37 37 39 44 44 53 48 57 57 59 57 57 57 57 57 48 48 43 36 36 37 42 47 47 57 57 57 57 54 57 57 68 68 68 68 68 68 68 68 59 57 57 57 54 54 54 59 68 68 68 68 68 68 57 59 57 57 57 54 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 54 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 57 57 59 52 52 52 57 57 57 57 57 57 57 39 39 39 57 57 57 57 57 57 57 59 59 59 57 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 39 43 43 62 62 62 54 62 62 62 62 62 62 62 44 39 29 23 39 13 23 23 26 12 12 23 27 43 44 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 52 52 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 43 43 47 59 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 68 62 62 35 35 35 43 59 59 59 52 52 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 59 54 54 59 59 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 48 48 48 57 57 57 57 50 57 41 57 57 57 43 38 24 24 24 30 36 39 46 32 34 32 44 36 36 32 39 37 37 37 42 42 57 47 32 32 19 25 25 42 36 36 23 23 41 44 28 23 15 12 12 21 21 30 37 33 43 43 43 33 40 28 33 33 40 40 39 36 36 47 39 39 37 37 37 28 23 21 18 23 28 28 37 37 35 35 26 16 20 10 12 12 20 20 19 15 8 8 8 13 16 21 21 30 32 37 37 40 39 28 28 14 12 11 17 12 12 12 20 15 15 19 16 24 22 31 23 19 15 15 23 20 34 34 20 18 13 13 16 16 17 15 11 12 14 15 18 21 9 9 9 14 12 9 9 9 15 21 21 21 14 13 10 19 10 10 8 8 8 8 8 15 22 21 11 11 11 17 22 15 13 11 13 8 8 8 8 8 9 10 10 10 10 10 10 9 9 9 10 10 8 8 8 10 8 8 8 8 8 8 15 13 17 11 11 11 11 14 12 12 11 12 8 8 8 13 8 9 9 8 10 8 8 6 6 8 8 10 10 10 10 15 15 19 12 12 10 11 8 6 6 8 8 8 10 10 8 8 8 8 6 6 8 8 8 8 10 10 9 10 9 8 8 9 9 9 9 10 8 12 12 8 10 8 6 8 8 8 8 8 8 8 10 9 9 10 10 10 10 10 9 9 9 9 12 9 9 9 12 12 12 10 10 9 6 6 6 6 10 6 8 8 10 6 9 9 6 12 9 9 9 9 10 11 8 8 8 8 8 8 13 9 9 9 9 8 10 10 10 8 8 8 9 10 8 8 8 8 8 8 8 8 11 11 12 12 16 11 8 8 10 10 10 10 9 10 10 18 11 14 14 18 15 15 10 10 8 8 8 8 8 7 7 10 15 24 15 12 11 8 8 8 8 8 8 10 7 9 10 10 10 10 8 8 8 21 25 26 17 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 12 13 15 13 8 8 8 11 8 8 8 8 8 8 6 7 8 10 13 13 10 9 8 8 6 6 6 6 8 10 11 6 9 9 7 8 8 8 8 8 8 8 8 8 10 10 11 13 19 10 10 8 8 6 6 10 6 8 8 8 8 8 10 10 10 10 13 15 16 13	Open. Hide. 7 7 7 7 6 6 6 8 8 8 6 6 6 6 6 6 8 9 9 10 10 15 15 15 10 7 8 8 8 10 11 19 19 20 14 14 20 28 26 33 31 31 35 36 36 35 36 33 34 34 47 47 47 48 53 53 50 50 50 50 42 41 27 23 8 6 6 6 6 6 6 6 7 10 12 19 21 17 15 13 17 32 37 48 48 48 48 53 50 42 42 42 38 38 36 47 41 41 39 34 41 23 15 13 18 10 10 10 12 10 9 9 10 12 9 11 11 11 11 12 9 9 9 9 12 12 23 11 9 9 9 10 10 12 25 26 32 22 23 19 11 9 11 8 8 8 10 25 23 21 21 28 18 25 23 23 13 14 14 21 23 24 24 15 19 19 23 18 15 15 15 23 24 32 32 32 23 10 10 10 10 14 24 23 20 11 11 11 12 18 19 23 18 11 16 11 15 12 12 11 10 10 10 13 19 19 19 15 15 15 18 18 18 19 19 15 17 10 10 11 12 15 15 24 15 15 11 11 11 17 18 12 12 12 18 18 15 18 16 15 15 16 16 16 15 14 14 12 15 11 10 10 10 10 10 10 10 11 19 28 34 25 16 11 11 11 11 11 11 12 10 10 10 10 10 11 9 15 12 9 9 9 9 9 9 12 12 17 11 11 11 12 20 21 30 23 21 11 11 11 11 15 15 19 20 23 23 20 16 11 11 11 23 23 13 13 13 17 20 18 18 12 11 11 11 11 15 15 13 13 21 16 16 12 12 12 11 12 11 11 13 18 11 13 11 8 8 8 8 8 10 11 10 10 10 7 7 8 8 8 10 8 8 8 11 12 12 15 15 23 12 12 12 12 10 10 10 13 19 22 18 16 11 11 9 9 9 10 10 10 11 11 11 12 12 14 13 11 10 9 10 13 15 15 15 15 15 13 8 8 6 6 6 10 10 10 9 9 9 9 10 9 9 9 9 19 13 22 22 14 12 10 8 8 8 8 9 9 12 13 13 10 10 8 8 8 8 8 8 9 9 9 9 10 10 9 10 10 11 11 13 11 11 11 11 10 8 9 10 12 8 9 8 8 10 12 12 10 10 10 8 8 6 6 8 8 8 8 8 8 10 10 10 11 11 12 12 25 24 13 10 8 8 8 6 7 12 10 10 8 10 10 14 10 16 11 10 10 11 10 10 10 10 10 10 9 9 11 9 10 10 10 13 10 12 12 16 16 18 23 21 21 18 18 10 10 6 6 8 10 13 14 11 8 8 8 8 8 8 11 12 15 15 12 8 8 8 8 8 8 12 16 15 10 10 10 12 10 8 8 8 10 11 10 9 9 9 9 8 15 12 12 8 8 8 15 14 14 14 11 13 12 21 16 14 12 17 18 14 20 20 18 20 18 18 12 12 6 6 8 10 12 13 8 8 8 9 14 10 12 7 7 8 8 10 13 13 22 17 13 10 10 10 18 14 22 22 22 24 24 19 16 9 9 8 10 8 8 10 8 8 8 11 11 8 8 8 8 8 8 9 9 8 8 8 8 8 10 10 13 10 10 12 12 14 17 13 14 9 9 8 8 8 10 10 12 7 6 10 10 9 9 9 11 8 8 8 8 8 8 8 10 8 10 8 10 8 8 8 8 11 11 10 10 8 8 8 10 10 10 8 8 10 8 10 11 11 8 10 8 11 10 9 9 10 10 9 16 16 12 13 6 6 6 6 6 6 11 10 10 8 13 12 8 8 8 8 10 8 8 8 8 9 9 8 8 8 8 8 8 9 10 10 8 8 6 7 6 6 8 10 10 6 6 8 8 8 8 14 12 10 9 9 9 10 10 11 8 8 8 7 6 12 10 17 12 12 13 13 17 8 8 8 8 8 8 6 6 8 8 10 11 10 9 9 12 10 10 10 10 10 10 8 8 8 8 10 8 8 9 16 18 31 19 17 11 9 8 8 8 8 8 8 10 13 6 6 6 7 8 11 13 10 9 6 6 6 6 10 13 15 18 17 17 12 12 11 12 10 12 12 12 10 10 10 15 10 8 8 6 8 8 8 9 10 14 9 8 8 10 8 8 9 9 10 10 12 9 10 10 13 17 8 8 9 10 15 10 8 15 15 14 10 9 9 9 8 10 10 9 10 9 10 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 11 10 8 8 8 8 8 8 10 10 11 8 8 8 8 10 10 10 8 6 6 12 10 10 8 8 8 10 10 12 12 10 12 16 14 11 11 10 14 16 16 11 8 8 8 8 8 8 6 6 8 8 8 8 10 8 9 11 11 10 8 8 8 11 12 12 9 8 8 8 7 8 9 12 11 11 11 9 9 8 8 8 11 8 15 13 19 11 11 11 17 12 8 8 8 8 10 10 15 15 18 16 17 10 8 8 6 6 8 6 8 15 15 15 13 8 8 8 10 12 14 9 9 9 9 10 10 10 10 8 8 6 6 8 8 15 17 12 10 10 10 15 12 14 14 12 8 7 6 8 8 8 9 9 6 6 7 7 11 8 8 6 6 8 8 8 8 6 6 6 6 8 8 10 10 13 10 10 8 8 10 13 10 10 15 11 12 12 9 9 11 8 8 10 10 9 9 18 18 10 8 8 8 8 7 7 12 12 13 8 8 6 6 11 7 11 11 11 8 8 8 8 8 8 11 11 8 10 12 8 8 10 15 10 10 8 6 7 7 14 12 15 12 15 10 10 10 12 9 10 15 15 23 13 9 8 8 8 8 8 8 8 10 15 15 12 12 11 10 9 8 8 8 15 15 8 10 9 9 9 9 11 8 8 6 6 8 8 8 6 7 10 10 10 8 8 6 6 6 6 6 6 6 15 7 6 6 6 8 8 8 8 6 6 6 6 8 10 13 10 8 8 8 10 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no062_f20.b1 MSMg01no062_f20.b1 CHROMAT_FILE:
MSMg01no062_f20.b1 PHD_FILE: MSMg01no062_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:53 2005
         (641 letters)



>mm_chr10_84448258_84449298
          Length = 1041

 Score =  951 bits (492), Expect = 0.0
 Identities = 620/730 (84%), Gaps = 104/730 (14%)
 Strand = Plus / Minus

                                                                        
Query: 16   agacatattgagaagcgcatgcaatatcatcagtatttcaagattccaagatgcaaaagc 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 agacatattgagaagcgcatgcaatatcatcagtatttcaagattccaagatgcaaaagc 982

                                                                        
Query: 76   ttaaaaaaaaattaaacccaagcacaaagaggaccaactcacagaggaaggcttctagga 135
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 981  ttaaaaaaaaattaaacccaagcacagagaggaccaactcacagaggaaggcttctagga 922

                                                                        
Query: 136  agacaggaagaaaaacatgaacggcaaagaagcagcttagcagcaagctagagagaggcc 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  agacaggaagaaaaacatgaacggcaaagaagcagcttagcagcaagctagagagaggcc 862

                                                                        
Query: 196  aaaggcccgcccgcaccctgagctggagggaggcacac---------------------- 233
            ||||||||||||||| ||||||||||||||||||||||                      
Sbjct: 861  aaaggcccgcccgcagcctgagctggagggaggcacacgcaggtggcacagagctgcagg 802

                                                                        
Query: 233  ------------------------------------------------------------ 233
                                                                        
Sbjct: 801  tggcacagggctgcagggggcacagagctgcagggggcacagagctgcagggggcacaga 742

                                                                        
Query: 234  ---gcagggggcacaga-----------------gctgcaggtggcacagggctgcaggg 273
               ||||||||||||||                 ||||||||||||||||||||||||||
Sbjct: 741  gctgcagggggcacagagctgcagggggcacagggctgcaggtggcacagggctgcaggg 682

                                                                        
Query: 274  ggcgctgttggacaaggcagctcaagctgaactgattgtaactcaccctaccacttccgt 333
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  ggcgctgctggacaaggcagctcaagctgaactgattgtaactcaccctaccacttccgt 622

                                                                        
Query: 334  atgtggctgccacatacggaaggtgtgaaatgtttcacagatcactttcttttggctaaa 393
            ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621  atgcggctgccacatacggaaggcgtgaaatgtttcacagatcactttcttttggctaaa 562

                                                                        
Query: 394  ctatgtagactatttttaaggagctggaagagagtatattattgtaagaagaattgtact 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  ctatgtagactatttttaaggagctggaagagagtatattattgtaagaagaattgtact 502

                                                                        
Query: 454  gaaatgttagcaggcaaaacgatgcgcttccttggctgtttccctactcaccgcattatg 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501  gaaatgttagcaggcaaaacgatgcgcttccttggctgtttccctactcaccgcattata 442

                                                                        
Query: 514  gctgctgctttttttttttt--aaagattttatttattttatgtatgtgagtacactgta 571
            ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 441  gctgctgcttttttttttttttaaagattttatttattttatgtatgtgagtacactgta 382

                                                                        
Query: 572  gctgtacagatggttgtgagccttcatgtggttgtagggaattgaatttttaggacctcc 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  gctgtacagatggttgtgagccttcatgtggttgtagggaattgaatttttaggacctcc 322

                      
Query: 632  ggttggctct 641
            ||||||||||
Sbjct: 321  ggttggctct 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information