BAC Information

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BAC

Clone NameMSMg01-062K02
Chromosome10 (Build37)
Map Location 47,365,201 - 47,366,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K02.T7 (MSMg01no062_k02.b1)MSMg01-062K02.TJ (MSMg01no062_k02.g1)
ACCAG288560AG288561
length1,1551,156
length of high quality
(start - end)		762 (43 - 804)851 (89 - 939)
definitionCHROMAT_FILE: MSMg01no062_k02.b1 PHD_FILE: MSMg01no062_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:25 2005CHROMAT_FILE: MSMg01no062_k02.g1 PHD_FILE: MSMg01no062_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTCTTTNNNTTGCAATGGGCGCTATAGACTCACTAAGGGAGAGGA
TCCGCGGAATTCTCAACAGATGATTCTCCATTGGTCGATAATCAGTTAAA
AATGTTCAAATGCAAATCCCAATGATTCTGAGATTCCATCTTAGCCCCAT
CAGAATGGCTAGGATAATAAACTCAAGGAACAGCATATGCTGGCAAGGAT
TTGTAGCAAGGAGAAGAACACACCTCCATTGCAGGTAGGAGTACAAACCT
TTACAATCACTTTGGAAATCCATTTGGTGGTTTCTTAGAAAATTAGGAAA
ACTTCTAACCCAAGACCCAACTATACCACTCCTGAGCACATAATCAAAAG
ATACTCTCCCATCCCCCAAGGACAATTGCTCAAATATGTCCATATGAGCT
TTAGTTGTAATATCCAGAATCTGGCAACAACTAGATGTCCTTCAACTGAA
GAATGAGCAAAGAAAACATGGTTAATTTACACAATGGAATACTACTTGGC
TATTAAAATCAAAGACATCATGCAATTTTCAGGCAAATTGATGGAAGTAG
AAAATACCATCCTGAGTAAAGTAACCCAGACCCCGAAAAATACACATGGT
ATGTATTCACTTATATGTGGATAATAGCCATAAAATAGAGAATAACCATG
CTACAATCAAAGAAACTAAGTAATAAGGTCCTAAGTTGGGATGCTTGAAT
TTCACTCAAAAGAGTAAACAAAATAGTCGTTGAAGGAGGATAGAGAGTAG
ACAGAAGAGGGAGTAAGGAGGAAATTGTAGATAGGGATCTAATGTGGGGA
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNT
NTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTNTNTTTNTTTNTTTTNTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTNTTTTTT
TTTTT

NCCCATTCTTTTTTTTTAACATGGAGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAATCAAAGAGTGTACC
TTGATCTGAGAATGAACTTTGTGTAATGTTTAGGGAATAAGAGAATGTGT
TACCAAACATATTGCAATTAACATAGTAGTCGTGAAGACACAAACTGCAA
GCTAAGAAAGGGCAGTACACATATTCAAGTATAAACATGAAAAAGAAATC
CATGAAGTAAGACAATATTCTCATGATCTGATTCAGAGAAGGAGGTGAAC
TCTCTAATTGCCTGCATTGTTATTGAACAAAAATGCAGCAGATATTGTAC
TTACGATATTTTTTCTTTAGAAAATTATTGTTTGTTTTCAATTGGCTATC
AAAGGAACATATTTTTGTACATCTTTCATTGGTTGTTTCCACCTCCTAAT
TTCTCACATCTCACCCCTCCTGCCTGTACTGTTAATTTTCTGTCTGTACT
GTTAATTTCTAGCATTTCTACATTCCAGTTAGTTCTCATCTTTACCACTC
ACTTCTCTTAGTTCTTTCCCCCCTCCTGAAAATCTTTGTGGACACCTGTT
AATTTCATGGCTTTTACTCATCTTTATTCCCACCTGGAAATGCAGATTTA
ATTTTTAGAAGCTAAAATCAATGTATGAGAGTAGAACAGATATTTTGTTA
TGTTCAGCCTGAGTGTCCTTCTTTATATAATATTTTCTAGTTCTATTTAT
TTTCTTCAAACTTATATTACTTAAGTTTTTGTTATAGCTGAATAAAATTC
CATCATTTATAGAAACTATTTTCACTATCCCCAAAGTGTTAATAAGTGCC
TAGGCTTAGTGCATATCTTTGCTACTATAAGAGGACCAGCCATCAATATG
TATGTGTAGATGACTCGACAATCAGATATACCATCATGGAAAAGCTTGCA
CCATAGTTATATAGTTGGGACACCTGTTAGNTTCAATTTCCATTATTTTA
GAATCCCGGTCCCTTTACTCCTACGGGGGAAACCAAGGGAAATATTTTTT
CCCCCAGACATTGAAGAGTTCTTTCTTTTTTTCCTCCCACTTTTAGGAAT
TGGTTTCCCCAAACTTACCCCAAATTTTTTGTTATCCCAATGAAAAATTA
TTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k02.g1 MSMg01no062_k02.g1 CHROMAT_FILE:
MSMg01no062_k02.g1 PHD_FILE: MSMg01no062_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:25 2005
         (851 letters)



>mm_chr10_47365001_47366252
          Length = 1252

 Score = 1419 bits (734), Expect = 0.0
 Identities = 821/850 (96%), Gaps = 5/850 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaagagtgtaccttgatctgagaatgaactttgtgtaatgtttagggaataagagaatgt 60
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201  aaagagtgtaccttgatctgagaatgaactttgtgtaatgttcagggaataagagaatgt 260

                                                                        
Query: 61   gttaccaaacatattgcaattaacatagtagtcgtgaagacacaaactgcaagctaagaa 120
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 261  gttaccaaacatattgcaattaacatagtagtcatgaagacacaaactgcaagctatgaa 320

                                                                        
Query: 121  agggcagtacacatattcaagtataaacatgaaaaagaaatccatgaagtaagacaatat 180
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  agggcagtacagatattcaagtataaacatgaaaaagaaatccatgaagtaagacaatat 380

                                                                        
Query: 181  tctcatgatctgattcagagaaggaggtgaactctctaattgcctgcattgttattgaac 240
            ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 381  tctcatgatctgattcagagaaggaggtgaactctctaattgcctactttattattgaac 440

                                                                        
Query: 241  aaaaatgcagcagatattgtacttacgatat-tttttctttagaaaattattgtttgttt 299
            |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 441  aaaaatgcagaagatattgtacttaccatatatttttctttagaaaattattgtttgttt 500

                                                                        
Query: 300  tcaattggctatcaaaggaacatatttttgtacatctttcattggttgtttccacctcct 359
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  tcaattggctatcaaagtaacatatttttgtacatctttcattggttgtttccacctcct 560

                                                                        
Query: 360  aatttctcacatctcacccctcctgcctgtactgttaattttctgtctgtactgttaatt 419
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561  aatttctcacatctcacccctcctgtctgtactgttaattttctgtctgtactgttaatt 620

                                                                        
Query: 420  tctagcatttctacattccagttagttctcatctttaccactcacttctcttagttcttt 479
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621  tctagcatttctacatttcagttagttctcatcttcaccactcacttctcttagttcttt 680

                                                                        
Query: 480  cccccctcctgaaaatctttgtggacacctgtta-atttcatggcttttactcatcttta 538
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 681  cccccctcctgaaaatctttgtggacacctgttacatt-catggcttttactcatcttta 739

                                                                        
Query: 539  ttcccacctggaaatgcagatttaatttttagaagctaaaatcaatgtatgagagtagaa 598
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740  ttcccacctagaaatgcagatttaatttttagaagctaaaatcaacgtatgagagtagaa 799

                                                                        
Query: 599  cagatattttgttatgttcagcctgagtgtccttctttatataatattttctagttctat 658
            |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 800  cagatattttgttatgctcagtctgagtgtcctt-tttatataatattttctagttctat 858

                                                                        
Query: 659  ttattttcttcaaacttatattacttaagtttttgttatagctgaataaaattccatcat 718
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ttattttcttcacacttttattacttaagtttttgttatagctgaataaaattccatcat 918

                                                                        
Query: 719  ttatagaaactattttcactatccccaaagtgttaataagtgcctaggcttagtgcatat 778
            ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct: 919  ttatagaaactattttcactatccc-aaagtgttaataaatgtctaggcttagtgcatat 977

                                                                        
Query: 779  ctttgctactataagaggaccagccatcaatatgtatgtgtagatgactcgacaatcaga 838
            |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 978  ctttgctactataaaaggaccagccatcaatatgtatgtgtagatgtctcaacaatcaga 1037

                      
Query: 839  tataccatca 848
            ||||||||||
Sbjct: 1038 tataccatca 1047


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 851
Length of database: 1252
Length adjustment: 10
Effective length of query: 841
Effective length of database: 1242
Effective search space:  1044522
Effective search space used:  1044522
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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