BAC Information

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BAC

Clone NameMSMg01-062N02
Chromosome10 (Build37)
Map Location 91,868,765 - 91,869,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062N02.T7 (MSMg01no062_n02.b1)MSMg01-062N02.TJ (MSMg01no062_n02.g1)
ACCAG288703AG288704
length1,1081,095
length of high quality
(start - end)		729 (87 - 815)753 (88 - 840)
definitionCHROMAT_FILE: MSMg01no062_n02.b1 PHD_FILE: MSMg01no062_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:48 2005CHROMAT_FILE: MSMg01no062_n02.g1 PHD_FILE: MSMg01no062_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTTTTNNNNNGACATTGGGCGCTATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCATAATTTTTCAGCCCTCTTCACAAAGAAAAATTGAGTTCC
TGAGTGTCATGAGTGCTTCTTATTCAGTGAGGCACTCGGTGAATTGTGCT
GTATACACAGGAGGAATTTTATCCATATTTTCTTATTTATATATCGATTC
ATATAGTTTTAGCGCTGGGTTTGAGTTTAGGGCTTTGGGCATGCGAGGCA
AACACTTCTGAGTTACATCCTCCTTGTCCATGCTACGGGTTATACCCGCA
ACCCTTCATTCACATCTTTTTGAGGACATAAAGAAAGGTAGCTGACTAAC
AGCCCAGTTTGCCCGCGGCGTATCTGCATATTGTTCTATGCTAGGTTGCT
GTACTGAAGATCCTTAGTACTTAATCCTACCACATCTCTGAGCCGTTCCT
GATCCCCACCTACAGCGTAGCAAGTACGCCATGTGCTCCCCTGTGTTTCC
CTGGGGCATATGTTCCCCTCGCCTGTCCTCCCTGTGGACAGAGTAACCCC
ATGCTCCCCCTTTGGCAGATCTTTACCTGCTCCCCAATGTTCATTTTTGA
AAATACTCATAACAGAATGGGTTAGGGAAGCATTTTTTCCATAGCTCAGG
TTACTGGCCATGGAATGAGCTACAGGCGCTGAAGTTAGGTGTAAGCACCA
TGTGGGACCTTTTAGAAACTGTGAAATGAATCCAGTACACCCTCTTCAGT
CCTTCCTCCTCTTGGAAGGTATGGAAGCAGTGGCTGGCTATCTAATAGGT
ACTTCAGCCACAATGCCCTAAGCCAAGGGTAAAAGAAACCTGTACCTCGG
ACAGTTTTCAGACATCACTAGACAAGCCCACACCCCCGCAGCTGACTGCA
ACCTACTAACATACGAGAGAGAAAAGAAAGAGACCTCAGAAATTTCTTTG
CTATCCCAGGCATTATTTTCTCAATGACAGGTCCAGCCTTATTTATTTAT
TTAATTAATTAAATTAATTAATTTATTTAATCAAATAATTTAATCTAATC
TACCCTATTTGCTTTACTTATTTCACCTTTTTTTATTTTACCTTCGTCAT
TCTTCTCC

CGATCTTTTNNNNTCTGAGGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCCGTTGAATCCTTCTCA
ACAGTCTGTTTTACCCCAACACTTCATTACCACCGCTCCCCAGCTGAAGA
GTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAA
CCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCT
TGCGCCTGTGATGGTAACCGTCCCAGGTTTTCTCGTCCCAGGTCTTCTCG
TCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCGGGATTTCTCGTCCCA
GGTCTTCTCATCCCAGGTCTTCTCGTCCCGGGTCTTCTCGTCCCGGGTCT
CTTTACCAACTCTTACACGCGTTCGCGACCGGCCAGGAAGAACGCAACAA
ACCGGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAG
AGAGCAAGAGTGCAAGAGTGCAAGAGAGAGAGAAAGAACAAGAACAAGAA
AGCAAGAGAGAGAAAAAGAACAAGAAAGCAAGAGAGAGAAAAAGAAAGCA
AGAACAAGAGAGAGAAAAAGCAAGAACAAGAGAGAGAAAAAGAATGGCAA
AACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTC
CCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGTAGA
ACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCAC
TTAGAACACAGCTGTCAGTGCCATCTTATAATGGCAAATGTGAGGGCGGC
TTCCCACAAGTATGCTGAAGTCTCTCTGTTTGATGGTATTATATAGATAG
TATGGAAGAGACTGTGAGAAGTGTATGGTATGTGTTGTTTCTTACCTATT
TTCCTCTCTTCTTTTTTTTTTTTCTTCTTCTTATTTCTTTTATCTTATTT
ATTTTTTTTTCTTTTTTTCTTTTTTCTTTCTTTCAATTTTCTCTCCTTCA
ATTATCTTTCCTTCTTCTCTTTATTTTTCTCTTTCTCTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_n02.b1 MSMg01no062_n02.b1 CHROMAT_FILE:
MSMg01no062_n02.b1 PHD_FILE: MSMg01no062_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:48 2005
         (729 letters)



>mm_chr10_91868565_91869693
          Length = 1129

 Score = 1379 bits (713), Expect = 0.0
 Identities = 725/729 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaattgagttcctgagtgtcatgagtgcttcttattcagtgaggcactcggtgaattg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 201 aaaaattgagttcctgagtgtcatgagtgtttcttattcagtgaggcactcggcgaattg 260

                                                                       
Query: 61  tgctgtatacacaggaggaattttatccatattttcttatttatatatcgattcatatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgtatacacaggaggaattttatccatattttcttatttatatatcgattcatatag 320

                                                                       
Query: 121 ttttagcgctgggtttgagtttagggctttgggcatgcgaggcaaacacttctgagttac 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagcgccgggtttgagtttagggctttgggcatgcgaggcaaacacttctgagttac 380

                                                                       
Query: 181 atcctccttgtccatgctacgggttatacccgcaacccttcattcacatctttttgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctccttgtccatgctacgggttatacccgcaacccttcattcacatctttttgagga 440

                                                                       
Query: 241 cataaagaaaggtagctgactaacagcccagtttgcccgcggcgtatctgcatattgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataaagaaaggtagctgactaacagcccagtttgcccgcggcgtatctgcatattgttc 500

                                                                       
Query: 301 tatgctaggttgctgtactgaagatccttagtacttaatcctaccacatctctgagccgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgctaggttgctgtactgaagatccttagtacttaatcctaccacatctctgagccgt 560

                                                                       
Query: 361 tcctgatccccacctacagcgtagcaagtacgccatgtgctcccctgtgtttccctgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctgatccccacctacagcgtagcaagtacgccatgtgctcccctgtgtttccctgggg 620

                                                                       
Query: 421 catatgttcccctcgcctgtcctccctgtggacagagtaaccccatgctccccctttggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 catatgttcccctcgcctgtcctccctgtggacagagtaaccccatgctcctcctttggc 680

                                                                       
Query: 481 agatctttacctgctccccaatgttcatttttgaaaatactcataacagaatgggttagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agatctttacctgctccccaatgttcatttttgaaaatactcataacagaatgggttagg 740

                                                                       
Query: 541 gaagcattttttccatagctcaggttactggccatggaatgagctacaggcgctgaagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcattttttccatagctcaggttactggccatggaatgagctacaggcgctgaagtt 800

                                                                       
Query: 601 aggtgtaagcaccatgtgggaccttttagaaactgtgaaatgaatccagtacaccctctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggtgtaagcaccatgtgggaccttttagaaactgtgaaatgaatccagtacaccctctt 860

                                                                       
Query: 661 cagtccttcctcctcttggaaggtatggaagcagtggctggctatctaataggtacttca 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cagtccttcctcctcttggaaggtatggaagcagtggctggctatctaataggtacttca 920

                    
Query: 721 gccacaatg 729
           |||||||||
Sbjct: 921 gccacaatg 929


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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