BAC Information

Click to search

BAC

Clone NameMSMg01-062P04
Chromosome10 (Build37)
Map Location 34,694,015 - 34,694,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672399, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062P04.T7 (MSMg01no062_p04.b1)MSMg01-062P04.TJ (MSMg01no062_p04.g1)
ACCAG288803AG288804
length1,1051,107
length of high quality
(start - end)		768 (90 - 857)806 (83 - 888)
definitionCHROMAT_FILE: MSMg01no062_p04.b1 PHD_FILE: MSMg01no062_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:04 2005CHROMAT_FILE: MSMg01no062_p04.g1 PHD_FILE: MSMg01no062_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATATNNNNNNNTTCAGTGGGCCNATAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCCATAATGGCCATAACTTTTAACACCCGTGTAATTACAGA
ATCAGCCTTTTCTGACCTTAATGCAGTTGTCCATTGAAATCCTGAATATG
TGTCTGTAGATGATACACATATTTCAGTTTACAAAACTTTGTAAAATGGA
AAACATCCATTTGCCAAATGTTGTTTCTTTGGGTATCCTTAGGGTTAGTT
CCTGTAGGCAACAGAGTTTAGTTATATAATGGACAAGTAAGACATTGCCT
CACATTTTCTTTGGCTTGTTGCCAAGTGATAGAGAATTCTTTCTTTAAAC
CTTTGCTGTTAATGTGGTGCTCTTTATGGAATTCTGAAGTCTCTAGTATA
CTTCCTATCAATAGCTGGTCAATTTCATTATTACCTTGCACCAGAGGGCC
TGGCAGAACTGTATAGGACCTTATGTGTGTTATATACAGTGGATGACTCC
TATTTCTGATCATTTGTTATGGATGAGTAAATAATGACGTCACTTCAGAA
TCATTCTGAATAAATCCAGCAGTCTCTATGTGTAAAACAACCATGTCTGC
ATATTGATAGTCAGTTACTATATTAAGAGACACTTGAAAATCTGACACCA
TAATTATTGCATGTAATTCAGATTTTTGAACTGACTTATAGGGACTTTCA
GCCACTTTACATCTTCAGATTTATATCCCACCTTTCCTGATTTACTGGCA
TCAGTGTAAAATATAGGGGCTCCAGATATTAGAGGTCCCTTTATTATATG
AGGGAGAACGCAATTAGGTTTTTTGTTTTGTTTTGTTTTGTTTTTTATTG
AACTGTANCCGCTTGCTTTTAGGGTATCTGTTGTCAGTCTCTCCCAAGAA
GTTACTGCATGCTTTTTTGTCATATTCATCTTGTCCCCATACAAGGCAAT
TTTTGTTATGTAAAAGGTACTACATTTCCACCAAATCCATTTCACTATTT
GTCAAAGTCCCATTTTTTTTTATATATCCATTCCAAAACCTTCTCAAAGA
AGGTTTTAACTTATTCCGCTTAAAGTCCAAAAAATTCCTTCTAAAAAAAA
TTTTC

NCCGATTATNNNNNNATTGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTACTGACAGAGCCAC
AAAAACATTTTTGGAAGAAAGATATTTTACTTCCTTTGGGTCCTATATAT
GAGTGTTTTTCCTAGTTTAAATGCTTTCTATTCTGATACTAGGAACAAAA
GTAAATTTTGCTCTGGGGATATATTTTTAAAGTAATTTTAATAACTATTT
AACCAACAATATATCAGTTGTGCCAGAATTACATGGGGTGTTATAGGGCC
ACTTATTTTATCAAGCTCCATTTTGTCTCATTTGTACTTTCTATTACACT
GCTAATGTTGTCTGCCAACAAATGTCATACAAACTTTAACAGACAATATT
TTTATTTAGTCCACAATATAGGGTCAGCTTTGCTACAAAGATCCAAATGG
TGTTAAGATGTTTCTTAAATGCCACATTTGCATGTACAAATTGTTTTTAT
ATGTCACATTCATTTCTTCTTTCCCATGTTTATCTCTGCTGCCAAAGTCA
ACAGCTATAGCTATGTCTTACTCAATAGCCTGCTTACCACAGGAACCATT
TTTCTACTGTGCACCAAATAACTTTGCTGGATATCATTGACCTCCATACC
CCCATCACTAGCTCCTCTGGATACCAATATTCTTGACAGGAACTCTTAAT
ATCTTTACCCATGAGTTGCAGCCTCTGTGGTTCTAAATTGTTATTATGCT
CTCAAGAGTCCTTGACCCTTTGCTAGCAAGGGCAGGAGGATTACTTCTCC
CTTGCCTGTTCCACTAGAGTTTTAGATGAATGAATTATTTCAAATTACTT
TATTTTTAATTATAGACTCTCTTCTCTTTGAGTTCATATAAGCATAATTT
GGGCAATAAAATCAAGTGAGGCATTATTTCCTGCTTAAATAAAGGTTTGT
TAATGAGCCCTTCAATTAAAGGGTCTATATGGCTGACTTTGGCTCCCTTT
GAAAACATTTTTTATCTTGGAAGCTATCCTAATTTGACCCCTAGCAACCC
CCTCTGTGGAAAAAGGAAAAAGATCCCTTTCCCGTAGAAAAAATAATCTT
TTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_p04.g1 MSMg01no062_p04.g1 CHROMAT_FILE:
MSMg01no062_p04.g1 PHD_FILE: MSMg01no062_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:04 2005
         (806 letters)



>mm_chr10_34693815_34695020
          Length = 1206

 Score = 1543 bits (798), Expect = 0.0
 Identities = 804/806 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    cattactgacagagccacaaaaacatttttggaagaaagatattttacttcctttgggtc 60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201  cattactgacagagccacaaaaacattttgggaagaaagatattttacttcctttgggtc 260

                                                                        
Query: 61   ctatatatgagtgtttttcctagtttaaatgctttctattctgatactaggaacaaaagt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  ctatatatgagtgtttttcctagtttaaatgctttctattctgatactaggaacaaaagt 320

                                                                        
Query: 121  aaattttgctctggggatatatttttaaagtaattttaataactatttaaccaacaatat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  aaattttgctctggggatatatttttaaagtaattttaataactatttaaccaacaatat 380

                                                                        
Query: 181  atcagttgtgccagaattacatggggtgttatagggccacttattttatcaagctccatt 240
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  atcagttgtgtcagaattacatggggtgttatagggccacttattttatcaagctccatt 440

                                                                        
Query: 241  ttgtctcatttgtactttctattacactgctaatgttgtctgccaacaaatgtcatacaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  ttgtctcatttgtactttctattacactgctaatgttgtctgccaacaaatgtcatacaa 500

                                                                        
Query: 301  actttaacagacaatatttttatttagtccacaatatagggtcagctttgctacaaagat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  actttaacagacaatatttttatttagtccacaatatagggtcagctttgctacaaagat 560

                                                                        
Query: 361  ccaaatggtgttaagatgtttcttaaatgccacatttgcatgtacaaattgtttttatat 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  ccaaatggtgttaagatgtttcttaaatgccacatttgcatgtacaaattgtttttatat 620

                                                                        
Query: 421  gtcacattcatttcttctttcccatgtttatctctgctgccaaagtcaacagctatagct 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  gtcacattcatttcttctttcccatgtttatctctgctgccaaagtcaacagctatagct 680

                                                                        
Query: 481  atgtcttactcaatagcctgcttaccacaggaaccatttttctactgtgcaccaaataac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  atgtcttactcaatagcctgcttaccacaggaaccatttttctactgtgcaccaaataac 740

                                                                        
Query: 541  tttgctggatatcattgacctccatacccccatcactagctcctctggataccaatattc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  tttgctggatatcattgacctccatacccccatcactagctcctctggataccaatattc 800

                                                                        
Query: 601  ttgacaggaactcttaatatctttacccatgagttgcagcctctgtggttctaaattgtt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  ttgacaggaactcttaatatctttacccatgagttgcagcctctgtggttctaaattgtt 860

                                                                        
Query: 661  attatgctctcaagagtccttgaccctttgctagcaagggcaggaggattacttctccct 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  attatgctctcaagagtccttgaccctttgctagcaagggcaggaggattacttctccct 920

                                                                        
Query: 721  tgcctgttccactagagttttagatgaatgaattatttcaaattactttatttttaatta 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  tgcctgttccactagagttttagatgaatgaattatttcaaattactttatttttaatta 980

                                      
Query: 781  tagactctcttctctttgagttcata 806
            ||||||||||||||||||||||||||
Sbjct: 981  tagactctcttctctttgagttcata 1006


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 806
Length of database: 1206
Length adjustment: 10
Effective length of query: 796
Effective length of database: 1196
Effective search space:   952016
Effective search space used:   952016
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |