BAC Information

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BAC

Clone NameMSMg01-063B02
Chromosome10 (Build37)
Map Location 84,064,963 - 84,065,268
singlet/doubletsinglet
Overlap geneTcp11l2
Upstream geneAppl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4
Downstream genePolr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B02.T7 (MSMg01no063_b02.b1)MSMg01-063B02.TJ (MSMg01no063_b02.g1)
ACCAG288894AG288895
length776759
length of high quality
(start - end)
310 (123 - 432)168 (157 - 324)
definitionCHROMAT_FILE: MSMg01no063_b02.b1 PHD_FILE: MSMg01no063_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:16 2005CHROMAT_FILE: MSMg01no063_b02.g1 PHD_FILE: MSMg01no063_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCCCCCNNCCCCCACAAACTACACTTCTCTATXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACCTTCCCTGCAGGAA
GGGACTATTGTTCTCTGGGTCCAGTTTACAGATGTGGAAATGGAACCACC
ACTGTATGAAGTGAGTTAGCTAAGGCACAGCACTAACAAGTGTCAGCAGG
CCTATTTGAGTGAGGCTATGCTTCCAGCTGACTCCCTCAGGGGAGGATGT
GTTACACATCCCGAGGCATGCCCGCCCCCATTGCTTTGATACTAGGTTGC
CCTTACTGGAGACTTGTTAATCAGCAGTGTAGGTTTGACTCTACAGTTAA
GTGCTTCACCACACTCTGTAGGGCTCTCTGAGCTCCATGGTAGCAGGCTA
TTGCTGTTCAGCCCCTCTACTGGAAGTGACATTTGTTCTCACCCAATCAA
TTGCAAGCAATCAGATGGCTCTCTGCTTGCTTCTGTCCTGTATTGAATTT
CATAAACAGTCCATACCGCCTGTGTTTGGAACCTCGTAAAGAACCTTTGC
TGGGTTCTCAGATGCTACTCACCCCTGCCCTGTTCTCTATGATAACTTTC
TTCCTTAGCCTTTCCGAATCCCCCCCTTTTTTACTATACCCCCTTTTTTT
CTTACCAAAAATTATTGCATTTTCTGCGTATTTAAATGGTTCGCCTTTGT
TCTCCACGATAGTCCATATAAAGTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCNNNCCNNNCCCC
CCCCTCCGATGATACGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCCTCTATCATACAGGTGCTGGGCTG
GACAGATGGCTCAAAGGTTACCAACACTGACTGCTCTTCCAGAGGTCCCG
AGTTCAATTCCCAGCAACCACATGGTGGCTCACTACCATCTATAAGGAGA
TCTGACTCCCTCCTCTGGTGTGTCTGAAGACAGTGACAGGTGCTAACTCT
CCAGATGATCACAACCGCCTGGGATGGCTGAAACTGTTCATCTACTGGAA
ACTCAACGCTCAGTGGAATCTGAATTTCTAAGAAGGACCACTGTCGTCGA
ACCATGGATTATTCCCCCCAGCCCCGAGGTTTTGTAACTCTTGCCATCCC
CTTGCGGCAGTGTTGCGCTGACCGCCCACGCCGTATGTCCCCTTTGACTA
CTTTGCTCTCCTATCTATATTTTGTGATTTTTCGTTACATCTCGCCACAT
CATGCTCTCACAATCTTCATTCCTTTCTTCTCTGTCTCTATCTAGCTTCC
TTCCGTTTTTCCCCCTCCCCCGTGCCCCACATCCCCCTCTTTTTCAACCC
CCCCCACCTCATCCCCCTTCCCCTTTTTTTCTTCCTTCTTCTCCCCCAAA
TCCTTTCTTTTCTCCATCTTCTTCGCCCTTTTCCCCTGCTTTCTACTCAC
CCCCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b02.b1 MSMg01no063_b02.b1 CHROMAT_FILE:
MSMg01no063_b02.b1 PHD_FILE: MSMg01no063_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:16 2005
         (310 letters)



>mm_chr10_84064759_84065468
          Length = 710

 Score =  549 bits (284), Expect = e-161
 Identities = 301/308 (97%), Gaps = 4/308 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaccttcc--ctgcaggaagggactattgttctctgggtccagtttacagatg 62
           |||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacca--cagctgcaggaagggactattgttctctgggtccagtttacagatg 262

                                                                       
Query: 63  tggaaatggaaccaccactgtatgaagtgagttagctaaggcacagcactaacaagtgtc 122
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggaaatggaagcaccactgtatgaagtgagttagctaaggcacagcactaacaagtgtc 322

                                                                       
Query: 123 agcaggcctatttgagtgaggctatgcttccagctgactccctcaggggaggatgtgtta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcaggcctatttgagtgaggctatgcttccagctgactccctcaggggaggatgtgtta 382

                                                                       
Query: 183 cacatcccgaggcatgcccgcccccattgctttgatactaggttgcccttactggagact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 cacatcccgaggcatgcccgcccccattgctttgatactaggttgcccttacttgagact 442

                                                                       
Query: 243 tgttaatcagcagtgtaggtttgactctacagttaagtgcttcaccacactctgtagggc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgttaatcagcagtgtaggtttgactctacagttaagtgcttcaccacactctgtagggc 502

                   
Query: 303 tctctgag 310
           ||||||||
Sbjct: 503 tctctgag 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)