Query= MSMg01no063_b11.b1 MSMg01no063_b11.b1 CHROMAT_FILE:
MSMg01no063_b11.b1 PHD_FILE: MSMg01no063_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:18 2005
(522 letters)
>mm_chr10_71944829_71945750
Length = 922
Score = 897 bits (464), Expect = 0.0
Identities = 488/496 (98%)
Strand = Plus / Minus
Query: 5 gaattctatggatgcactgccaccttcatcaatgtaaaaagttagcctatgacacacagg 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 496 gaattctatggatgcactgccaccttcatcaatgtaaaaaggtagcctatgacacacagg 437
Query: 65 aaatgatcattttaccatcacaccaggaacccgtgttcagggtaaccttgattgccagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaatgatcattttaccatcacaccaggaacccgtgttcagggtaaccttgattgccagaa 377
Query: 125 gcatcaaccactaccacagtagttcttagaataccagacctagatttagaacttctatgg 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 376 gcatcaaccactaccacagtagttcttagaataccagacctagaattagaacttctatgg 317
Query: 185 tccaggactagaaaagatgcttcctcctggagaccaacagtatgtcagtttattctttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tccaggactagaaaagatgcttcctcctggagaccaacagtatgtcagtttattctttaa 257
Query: 245 gatcaactgacttcgagtttcagccagtaatattatcaactatgaatacagccaccatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gatcaactgacttcgagtttcagccagtaatattatcaactatgaatacagccaccatca 197
Query: 305 ccagcatcatctttagaatcatcaccatcacctcatgaaccactaagacaattaagcagg 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccagcatcatcaccagaatcatcaccatcacctcatgaaccactaagacaattaagcagg 137
Query: 365 accctggggagatcagaagatctggggaaatagagagcaattgcttgttaagctgagaaa 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 accctggggagaccagaagatctggggaaatagagagcaattgcttgttaagctgagaaa 77
Query: 425 gtaaaatgcagagacaaatgagaaaagagaaaagttgaaaataactgcctaggaggatga 484
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 76 gtaaaatgcagagacaaatgagaaaagagaaaagttgaaaataactgcttaggaagatga 17
Query: 485 aattaattcctcacac 500
||||||||||||||||
Sbjct: 16 aattaattcctcacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_b11.g1 MSMg01no063_b11.g1 CHROMAT_FILE:
MSMg01no063_b11.g1 PHD_FILE: MSMg01no063_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:18 2005
(576 letters)
>mm_chr10_71813444_71814419
Length = 976
Score = 930 bits (481), Expect = 0.0
Identities = 567/631 (89%), Gaps = 55/631 (8%)
Strand = Plus / Plus
Query: 1 atggccatgggtatagatcatggctatgccatcaacaactcaagacttctgggctcaaa- 59
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 146 atggccatgggtatagctcatggctatgccatcaacaactcaagacttcggggctcaaat 205
Query: 60 tgtaggtagatcagaaaacaaggatgagacaagaagcaggaccagacttaacctcaagac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgtaggtagatcagaaaacaaggatgagacaagaagcaggaccagacttaacctcaagac 265
Query: 120 atgcttcacagaca---------------------------------------------- 133
||||||| ||||||
Sbjct: 266 atgcttcccagacatccatattctctggtttgactctaccacccaaagtttccaggattt 325
Query: 134 --------tccatattctctggtttgactctaccacccaaagtttccaggacttcaaaca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccagaagtccatattctctggtttgactctaccacccaaagtttccaggacttcaaaca 385
Query: 186 acagacatctacttagaaaccaaatgttcaaacacaggagcctatgggacattacatatc 245
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acagacatctacttagaaaccgaatgttcaaacacaggagcctatgggacattacatatc 445
Query: 246 caaattgtaatctctgaaaaatatcacaattttaattctacttggtgtgcccataaagtg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caaattgtaatctctgaaaaatatcacaattttaattctacttggtgtgcccataaagtg 505
Query: 306 gaccccttccccaaaactatgtaactctagattcactccactatagtgtatgtgtataag 365
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 506 gaccccttccccaaaactatgtaactctagattcactctactatcgtgtatgtgtataag 565
Query: 366 tacaccccgaataaaggaatgcacataagctaagatggtccgagggagccatttcattca 425
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 566 tacaccccgaataaaggaatgcacataagctaagatggtcggagggagccatttcattca 625
Query: 426 agaccagtgaaggcctttgcataaaagagctgtaacactaagttctcagagaaggccttc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 626 agaccagtgaaggcctttgcataaaagagctgtaacactaagttctcagagaaggtcttc 685
Query: 486 tcctcccgcccttttgcccctggcattcattcacagccaaaccaggatcctcccaaattc 545
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcctcccacccttttgcccctggcattcattcacagccaaaccaggatcctcccaaattc 745
Query: 546 catcctattcagaactctacttcatccttcc 576
|||||||||||||||||||||||||||||||
Sbjct: 746 catcctattcagaactctacttcatccttcc 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
