BAC Information

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BAC

Clone NameMSMg01-063B16
Chromosome10 (Build37)
Map Location 99,017,239 - 99,017,522
singlet/doubletsinglet
Overlap geneLOC667502
Upstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232
Downstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063B16.T7 (MSMg01no063_b16.b1)MSMg01-063B16.TJ (MSMg01no063_b16.g1)
ACCAG288922AG288923
length658674
length of high quality
(start - end)
295 (28 - 322)284 (56 - 339)
definitionCHROMAT_FILE: MSMg01no063_b16.b1 PHD_FILE: MSMg01no063_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:19 2005CHROMAT_FILE: MSMg01no063_b16.g1 PHD_FILE: MSMg01no063_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGATCCGCGGAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCAC
TTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATCCTTTTTATGCCCCACCCCGCCCCCAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACTTGGAGGGCACCATCCTGAGTGAGGTAA
CACATTCACAAAGAAATTCACACAATATGTATTCACTGACTAGTGGATAT
TAGCCCCACACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACAC
ATGAAACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGAATGAGCTTTGATAGGTTAGAGCTCAAACCTTTGCTTTGCTG
TCTAAACTCTTTCTTTCTTGGAATGGCTATAACATGTTTTAATTCTCATT
TGATTATGAGCAATAGCACAAAGATCAAATACTTGTTCGTATTTATCTTC
CTTTCTATTAGAGAATTCGACTAGAGGCTCTGCTTAAGCAGCAGTAATAT
GTTACATTTATTACACTCATATTCTATAAGGAAAGGCACACATATTTCTA
AAAAAAAACCCCAAAACAAACAAACAAACAAACAAACAATCTTACTAACC
CCACACACACAACTTCCTTGTGTTAGGTGCCGTGTCTTAGAGAAATACAC
ACGCTTCCTAGTCTTGTGGGAATCAAACATGGATTTCATGAACATGCTAT
TTGCCAGAAATAAAACAAATTCTCAAACAGCCTTCACGTTTGGCATAGTT
ATTAGCCCTACATGTGACTTAGAAGCTTCATGAGCCATAGAAAGAAACTT
TATTTCAGGACTTTTCATAGTTGAAAAGCATTTGATTTTAGTGTCATCTG
ACTTTTTAACATACTTTGGATCCTGAATCATTTGACTCAAGTTTAGGTCA
ACCAGAGGGTAGAGTTGCGCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_b16.g1 MSMg01no063_b16.g1 CHROMAT_FILE:
MSMg01no063_b16.g1 PHD_FILE: MSMg01no063_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:19 2005
         (284 letters)



>mm_chr10_99017039_99017722
          Length = 684

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatgagctttgataggttagagctcaaacctttgctttgctgtctaaactctttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatgagctttgataggttagagctcaaacctttgctttgctgtctaaactctttctt 260

                                                                       
Query: 61  tcttggaatggctataacatgttttaattctcatttgattatgagcaatagcacaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttggaatggctataacatgttttaattctcatttgattatgagcaatagcacaaagat 320

                                                                       
Query: 121 caaatacttgttcgtatttatcttcctttctattagagaattcgactagaggctctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatacttgttcgtatttatcttcctttctattagagaattcgactagaggctctgctt 380

                                                                       
Query: 181 aagcagcagtaatatgttacatttattacactcatattctataaggaaaggcacacatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagcagtaatatgttacatttattacactcatattctataaggaaaggcacacatat 440

                                                       
Query: 241 ttctaaaaaaaaaccccaaaacaaacaaacaaacaaacaaacaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaaaaaaaaaccccaaaacaaacaaacaaacaaacaaacaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)