BAC Information

Click to search

BAC

Clone NameMSMg01-063E04
Chromosome10 (Build37)
Map Location 52,728,427 - 52,728,713
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E04.T7 (MSMg01no063_e04.b1)MSMg01-063E04.TJ (MSMg01no063_e04.g1)
ACCAG289042AG289043
length688676
length of high quality
(start - end)
296 (60 - 355)287 (58 - 344)
definitionCHROMAT_FILE: MSMg01no063_e04.b1 PHD_FILE: MSMg01no063_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005CHROMAT_FILE: MSMg01no063_e04.g1 PHD_FILE: MSMg01no063_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCTCTGC
TTATCTCTGTCCCCCATTTTAAAAATAGGCTTATTTGGTTCTCTAGAGTC
TAACTTCTTGACTTCTTTGTATATTTTGAATGTTAGCCCTCTATCGAATG
TGGGGTTGGAAAAGATCTTTTCCCAATTTGAGGGTCGCCATTTTGTCCCA
TTGACAGTGTTCTTCCCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCA
TTGTCAATTTTTGATCTTAGAGCATAAGCCATTGGAGTTCTGTTCAGGAA
GATTTCCCCTGTGCCAATGTGTTTGAGGTTCTTCCCCACCTTCTCCTCTT
TTAGTTTCAGCGTATCTGGCTTTATGTAGAGGTCCTTGATCCAACTTGGA
TATGAGCTTTGTACAGGGAGATAAGAATGGGTCAATTTGCATTCTTCTAC
ATGCTGACAGCCAGTTGAACCATCAGCATTTGTTGAAAAACACTGTCTTT
TTTTTTTTCTCTGAATGGTTTTGGTTCCTTTGTCAAAGATCAAGTGATCA
AAGGTGTATGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTCCC
TCTCTGTTTCTGTTCCAATACCATGTGGTTTTGTTTGTGTGTTTGTTTTG
TTTTTTTTCCTGATTGCCGTGGACTACCGCCTTAAGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTCCTTGCTGACACTTTATCCTTCTGCTTCTTTCCCCTCTGAC
CTCAGGTTTAAAAATACAGCAGCAGCAACCCCACAAGCCTTAATTTAAAC
TCTAATAGGATGCTACAAGGTCAGTTAAGTAATTTCCTCCCCTGGAAATG
TAACTTTCTTGATATATTATTTATCTACCAGTTGGCTTTGCACTTCCAGC
CACATACTTGAGACATCACAGAAACATCAAAAGGACAGTCTAATTTTTTC
TCTGCTTAGGTTAGAGATTCAAGGGCACATGGCATGGCACAGATGTTATA
GCCACACACTGAACAGATGGCCCAAACTTTATCCTGAAGAAAGTGCTTTG
GGGGATTTAGACCCAGTTGTACCAGACCATGGATAATTCATACTTTCTCT
GCAGAAAATAGTAAAGCAACATGAAGAGAGAAGCTACTCTAGGTGGTGGT
AGGTATGGTTCACCAGACAAGAGGTGTGAAACCCTCTTAATGTCATAGTA
CTAAATCTAGCCAGGTTAAATGTACTGCTAAGGAGGTATCAATGTCACAG
CTAGATGTCATTTCTCAGATAGATGAATCCTATCACCCTGCAGCAGCAAC
CATATTTTCCCCTATCTTTGAAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e04.g1 MSMg01no063_e04.g1 CHROMAT_FILE:
MSMg01no063_e04.g1 PHD_FILE: MSMg01no063_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:33 2005
         (287 letters)



>mm_chr10_52728227_52728913
          Length = 687

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccttgctgacactttatccttctgcttctttcccctctgacctcaggtttaaaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccttgctgacactttatccttctgcttctttcccctctgacctcaggtttaaaaatac 260

                                                                       
Query: 61  agcagcagcaaccccacaagccttaatttaaactctaataggatgctacaaggtcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagcagcaaccccacaagccttaatttaaactctaataggatgctacaaggtcagtta 320

                                                                       
Query: 121 agtaatttcctcccctggaaatgtaactttcttgatatattatttatctaccagttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaatttcctcccctggaaatgtaactttcttgatatattatttatctaccagttggct 380

                                                                       
Query: 181 ttgc-acttccagccacatacttgagacatcacagaaacatcaaaaggacagtctaattt 239
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 t-gccacttccagccacatacttgagacatcacagaaacatcaaaaggacagtctaattt 439

                                                           
Query: 240 tttctctgcttaggttagagattcaagggcacatggcatggcacagat 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttctctgcttaggttagagattcaagggcacatggcatggcacagat 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)