BAC Information

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BAC

Clone NameMSMg01-063M04
Chromosome10 (Build37)
Map Location 52,180,212 - 52,180,510
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e
Downstream geneEG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063M04.T7 (MSMg01no063_m04.b1)MSMg01-063M04.TJ (MSMg01no063_m04.g1)
ACCAG289415AG289416
length690693
length of high quality
(start - end)
607 (43 - 649)299 (73 - 371)
definitionCHROMAT_FILE: MSMg01no063_m04.b1 PHD_FILE: MSMg01no063_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005CHROMAT_FILE: MSMg01no063_m04.g1 PHD_FILE: MSMg01no063_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCGCCTGCCTCTG
CCTTGCAAGTGCTGGGATTAAAGGCGTGTGCAACCACGCCCAGCTTTATT
TTTATTTTTAATTAGATATTTTCTTTACTTACATTTTAAATGTTATCCCC
TTTCCTAATTTCCCCTCTGAAAATCCCCTAACCCTTCCCCTGTCCCCCTG
CTCCCCAACCCACCCACTCCTGCTCCCTGGCCCTGGCATTCCCCTATACT
GGGGCACTGAACCTTCACAGGACCAAAAGCATCTCCTCCCATTGATGACT
AACTACATCAACCTCTGTTACATATACAGCTGGACCCATGAGTCCCACCA
TGTGTACTCTTTGGTTGGTGGTTTAGTCCCGGGGAGCTCTGGGGGCTGGT
TAGTTCATATTGTTGTTTCTCCTAGGGGGCTGCAAACCCCTTCAGCTCCT
TGGGTCCTTTCTCTAGCTCCTTCATTGGGGACCCTGTGCTCAGTCCAGTA
GATGGCTGTGAGCATCCACTTCTGTATCTGTCAGGCACTGGCAGAGCCTC
TCAGAAAAAGACAGCTATTATCATGCTCCTGTCAGCAAGCTCTTATAGGC
ATCGACAATAGTGTCTGGGTTTGGTGGCTGTTTATGGGAT
GAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGCTCCAAATTGTCCCAAGAAATAAAG
GCACTTTACAGTGAATGGCCAAAAGCCATAGCAGAAATACTGCAGTTCTA
AGTATCTAAGTATAAAATATGTATGCCACCATCATAAAATAGATTACAAT
ATAGGCAAGGCAGAATCAGCAGAGACATACTAGTAATGCATATCAGTACA
AAAGAAGTGAAGCAAATATACGTTATGTGTATAAAGGGCCTGATGAAGTA
GTTAATAAGGCACATATTATAAATCTCCAAAATTGTACCCTGACGTTAGA
GAACCTATTCTTTTCAAATAACGTTACAATATTCAAAGAAACTGACATAT
CACAAAGAAAGCTTCAGGGAGTTGCAGGAACTAGGAAGAGTACCCACAAT
ATTCTCTGATCACAGAACTGTTCTTTTAGAAATTAATAATTCTTTTAAGA
AAAAAAAATGTAGCTGAAGAGACAGCTCAGCATTAAGAGCTTTTTCCTGC
TCTTACGCAGGACCTAAGTTCAGTTCCCAGCACCTACATCAGTTGGTTGA
CAACTAACCAGGACTCCAGCTCCAGGGATTCCGAAACCCTCTTCTGGCCT
CCATGAGCCCAGTACAAACATGGCACTCACTCACATGGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_m04.g1 MSMg01no063_m04.g1 CHROMAT_FILE:
MSMg01no063_m04.g1 PHD_FILE: MSMg01no063_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:15 2005
         (299 letters)



>mm_chr10_52180012_52180710
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctccaaattgtcccaagaaataaaggcactttacagtgaatggccaaaagccatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggctccaaattgtcccaagaaataaaggcactttacagtgaatggccaaaagccatagc 440

                                                                       
Query: 61  agaaatactgcagttctaagtatctaagtataaaatatgtatgccaccatcataaaatag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 439 agaaatactgcagttctaagtatctaagtataaaatatgtataccaccatcataaaatag 380

                                                                       
Query: 121 attacaatataggcaaggcagaatcagcagagacatactagtaatgcatatcagtacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attacaatataggcaaggcagaatcagcagagacatactagtaatgcatatcagtacaaa 320

                                                                       
Query: 181 agaagtgaagcaaatatacgttatgtgtataaagggcctgatgaagtagttaataaggca 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agaagtgaaacaaatatacgttatgtgtataaagggcctgatgaagtagttaataaggca 260

                                                                      
Query: 241 catattataaatctccaaaattgtaccctgacgttagagaacctattcttttcaaataa 299
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 259 catattataaatctccaaaattgtaccctgacgttagagaatctattcttttcaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)