BAC Information

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BAC

Clone NameMSMg01-064A11
Chromosome10 (Build37)
Map Location 67,141,752 - 67,142,133
singlet/doubletsinglet
Overlap genenone
Upstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
Downstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A11.T7 (MSMg01no064_a11.b1)MSMg01-064A11.TJ (MSMg01no064_a11.g1)
ACCAG289614AG289615
length1,2631,266
length of high quality
(start - end)
633 (126 - 758)386 (71 - 456)
definitionCHROMAT_FILE: MSMg01no064_a11.b1 PHD_FILE: MSMg01no064_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:38 2005CHROMAT_FILE: MSMg01no064_a11.g1 PHD_FILE: MSMg01no064_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGTCTCCNTNNNNTCCATTCGCGCTAACGACTCCTATGGGAGAGGATCC
GCGGAATTCATTATGTAGTCCTGGACCCTTTAAATCTCTGGATTCTCCAG
CCTCATCCCCAGAGAACCCCTTAAAGACGCGTGCATCACAGTGCCCCTCA
GAGGACCAAGGTGGGTTTCTCTTCTTTTCTTTTACTACTTCATGATGTGA
AGGTGATGTGCGCTCACTGGACATCCTAACTTTGGTCTTTTCCTGGGCTA
GCCTTATTTAGTACGATGCTTTCCTTGTGCTGGTCAGCCACGGCCGGCCA
CGGCCAGCCATGGCTCCCTGTAGTCATGTGATCATGTGGAACAGCTCCAG
GCTGGACTGTGTTGCTTGAGGTGTTTTGGGCAGAAATATTCAGTAAATTG
CATCAAATTTCTTGTTCCTTTTTCTCCTTTTTTCCCACTACTTGTTAATA
TTTTATTTTATCATAATCACCCCAACCCTAACTCCTCCCACATATACTCC
CTACCTCTCTAACTTTGTGCTTCTCCTTTTCAAATAATCCATCCACTCTA
ACCTGTGGTACCATATATAAACTGCTAGTTATGGGGTCATCCATTAGAGC
ATACTCAACCTACCAGGAAACATATTCTTAAATAAACAAATCTAACTCTT
TCCCCTTTAGAAGTCATCCACTGTCCACGCTAGACTGTCATTGGAAACAT
TTTCCTTTGCCTTTTGCTCCTGAGACCAGGTCTCACTACACAGCTCAGGC
TGACCTGAGATTCACAATGCTAAGCAGGCTGCCACTTTGGTTAGCCTGAT
ACAGTGCTGTGAGATAGGTACTATTATAGTCCACCATGTAAAGATGAGAA
AACATGGATTGGTGAGTATAGTATTCACAAGCCGCTCATCAAGTCTGGGG
AAACAAGGTTGGTTGCATAGGCCTGGAACCTGGGTTATGAAGCACGGCTC
TATGTTCTGAAAAATTCCCAAACTCCCCCCGTGTCTAGGGATTCTTTAAA
AATTTTTGGATTGGAAAGGCCTTCTTTTTTTATTTTTTTTCAAACCTCGT
ATATTTTTTTGTGGGAAGACCTTGAACTTTGTATATAAGGGATTGGGTTC
TTGAAATGCCCCATTTTTTGTTTGTATTTCTCGCACCTCTAAATGAATTC
CCCCCCAAGGTGATAAAAAAAGAATTTCCTACTCTCAATTTTCCTCTCTT
TATGTGATCTGTGAGAACTCTTATTTGAGGGTGGCCCTCTCTCTTTGTTA
GTAAAATTTGTTG
NNTTCTGACGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACCCAAAGCCCAACTCATCACCATCTTG
CTGTTAGCATCACCAGAGCCAGAAGGCATGACTCTTACGATCCAGTCACG
GGAAAGTTTCTGTGAGCGGTAAATGACCAGTTGTAGTTCTCAGACCAGTG
AGATGTTTTTCTGCACTGAACAGGAGGGTAATTCCACTTCTAAACTGAGA
TGTTTCTACAGAGGCCAACTTGTGTTGAGCTGTGAACCATGAAGTATTTT
TGGCCAAGAATCAGCCTCATTGAGGAGCTTTAGAAAGGATGTTTTAGTCT
CACACTTAATATGCACACGTATCGGGATATACATTTTAAAAGAGGAAGTA
ATGTTGTTTTTCTCAAAGCTGAATGGAAACAAAGCTAGACCCTACAGGTG
TATTTTTTTTTCCCCCCCCGTTCTCTTGAGACACCGTGAAAAAACATTGC
CATGTTTTTCTTCTGAGTTGGCTTCGGTCCCTTGTGCTGTGGTGTGTCCA
GCATATCTTATAAGCAGGAGTCAGTCTGTTGGGCCCTATCTCAAAGTTAG
TGTGTGGGAAATCACTCATCTGCCATGCTATGGCTCAATGGAGGCTGCAC
CCTTAATGGGGAGACACACACACCAACTTTTCCAATCATCTTGAAAGATT
TTCACTTCCCCCTTTTCTTTTTTTGGGTGACATTGCCTTCCTAGTAAGAC
TTTACCAGTTTACCGGTGTGCTTCCGTTGGTTTCCTTAGAAGGCCTGTGG
CCCAGCAGTTCAGCTGGGGGACAACTTCAATTTCCATGCGTTTCACTGGG
CTTGTTTTCTTACGGGTACGAAAGTCTACTCCTGGCTATTAAAGGCCATG
CATTTATGTCTGAATATATATGTAAATGGGATTGTGGAAATGTATGTGCA
TTTATTCCTCATTGGATGGATTTCTTTAATTTTTTTTATTTCCCTTTTGT
TCTCACCTTTAATCTAGCTATCTTTTTTCTTCTCTTTTATTTATTTATAT
CTTCTTCTCATTTCTTTTCCTTCTCCCCACCTTTCTTATTCTCTATTCTT
TTTCTCTTTTTTTATCTCTTTATTTTTATCTTTCCTCTTTACTCATCTTT
TATTTATTTCTTTGTCCCTTTTATATCTTTTCTTTCATTTTTTACTATTT
ATATTTTATACTCTCTTTATCTACTTCCTATTCTTTACATTCCCATACTA
TTATCTTCTTCNCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a11.g1 MSMg01no064_a11.g1 CHROMAT_FILE:
MSMg01no064_a11.g1 PHD_FILE: MSMg01no064_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:38 2005
         (386 letters)



>mm_chr10_67141552_67142337
          Length = 786

 Score =  708 bits (366), Expect = 0.0
 Identities = 378/382 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacccaaagcccaactcatcaccatcttgctgttagcatcaccagagccagaaggcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacccaaagcccaactcatcaccatcttgctgttagcatcaccagagccagaaggcatg 260

                                                                       
Query: 61  actcttacgatccagtcacgggaaagtttctgtgagcggtaaatgaccagttgtagttct 120
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 261 actcttacgatccagtcacgggaaagttcctgtgagcggtaaatgaacagttgtagttct 320

                                                                       
Query: 121 cagaccagtgagatgtttttctgcactgaacaggagggtaattccacttctaaactgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaccagtgagatgtttttctgcactgaacaggagggtaattccacttctaaactgaga 380

                                                                       
Query: 181 tgtttctacagaggccaacttgtgttgagctgtgaaccatgaagtatttttggccaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttctacagaggccaacttgtgttgagctgtgaaccatgaagtatttttggccaagaa 440

                                                                       
Query: 241 tcagcctcattgaggagctttagaaaggatgttttagtctcacacttaatatgcacacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagcctcattgaggagctttagaaaggatgttttagtctcacacttaatatgcacacgt 500

                                                                       
Query: 301 atcgggatatacattttaaaagaggaagtaatgttgtttttctcaaagctgaatggaaac 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgggatatacattttaaaagaggaagtaatgttgtttttctcaaagctgaatggaaac 560

                                 
Query: 361 aaagctagaccctacaggtgta 382
           |||||||||||||| |||||||
Sbjct: 561 aaagctagaccctataggtgta 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)